Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02880 ATGGAACGGAGCTCTTTCTCTCCGCGAAACCGGAATACCCGACCCAAGTCCGATATCTACTCTACTTTCGTAATTCACGACGACGATGAAGACGAAACTAACCGCCGCCGGAAAGCCGGCAGCGCTGAAGCTCAGGAAGATCCATACGCGACAATGGTCTTCAAAGACAACGGCAACGATGACGACGATGACGAAGATTCCTTTCTCCCTCCGCTTCTCAAGCGTCTCCCCAAGGATTTCGGTGGCGGAGCGTCAATGGACTACGACGATGAGGATGATGATGAATCTGGCGATTTTGGCACGATGATTGTGAAAAGCGATCGGAGCCGGCAGCGAGATCGGTCTTCTTCCGGTTTGACCTCACCGGTAGGCTCGACCTGGAAGACTGGGAGTTATTCTCAGGCGAATCCTTTGAATGGCGAGGATGATGATGAGGATGACGACGGTGGTGGATTTTCAACTTTTGTTATGCGTTCTACGGTGAAGTCTGGTGAGAGAGAGTCTGTAAGTGGAACGATGGTGCGAAGGACAGGCGGTAATGATGGTGGTGGTGGTGGTTCTACGATGGAGAGGGCGATTGCGAGTATGCAAGGTGTGGGAGAGTTTGGATTAGGGAAACAGAGGAAAGGAAGTGGATCTTCACAGAACGATGAGGGAAAGCAACATTCGGTAACTACCAAGGTTTCGACGAGTTCGATCCCTGATAGTGTTATCAGAGAGGATCCTACCACCAAGTATGAATTACTCAATGAACTTGGGAAGGGTTCTTATGGTGCTGTTTACAAAGCCAGGGATTATAGAACCTCTGAGATGGTTGCTATCAAAGTCATATCATTATCTGAAGGAGAGGAGGGATATGAGGAAATTCGTGGTGAGATTGAGATGTTACAACAGTGCAATCATCCTAACGTTGTCCGTTATCTTGGAAGCTATCAAGGAGAAGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTTGCTGATCTTATGAACGTGGCTGATGAAGCACTGGATGAGGGTCAAATAGCATATATCTGTAGAGAAGCACTGAAGGGACTTGATTATTTACACTCAATTTTTAAAGTCCACAGAGACATCAAAGGTGGGAATATCTTATTAACTGAACAAGGAGATGTCAAGCTAGGGGATTTTGGTGTTGCTGCGCAGCTTACAAGGACTATGTCAAAGCGCAATACGTTTATTGGAACCCCTCATTGGATGGCTCCGGAAGTCATTCAGGAAAGTCGCTATGACGGAAAGGTAGATGTCTGGGCTCTTGGTGTGTCTGCAATTGAAATGGCCGAGGGTGTTCCTCCAAGATCGTCAGTGCATCCGATGAGGGTTTTATTCATGATATCCATTGAACCAGCTCCAATGCTCGAGGATAAAGAAAAATGGTCTTTATATTTCCACGATTTTGTTGCAAAATGCCTGACCAAAGAACCTCGTCTCCGCCCTGCTGCATCTGAGATGTTGAAGCACAAATTTTTTGAAAAATGGAAAGTTGGATCCGCTGCAATGTTTCCAAAACTAGAAAAGGCAAGGCAAGTCAGGGCTTCAATGGCTTTACAGGTGCAAACTCTTGCTCCTGCTTCAGCGGGAGAACAGGAGCCAATGATAGCTTCCATACTAAATGACGAATATGGAGATACTGTTCCATCCAGACCTCAGAACATAAGTGTTGAGGAGGCAGCTTATATCTCATCACATGGAACTATGAGGAAGCTGCAAAAGGTGGATGAGGTTGACAATAGTGAAGGTGACTTTGGCACAATGATAGTCCACCGGGACGAATTGTTTAAGACCACACAGGATACAGACTCTGCTAGTTATAAAACTGCCTTCACCAGCGGCACAGGAGGCAGATTATCTGACCCTGGGGTTGAGAGTCTTAAAGTTGGCGACTTGAACACTGCCTCTTTTAGAGGATCTGGTTCTACTACAGATACCATACAATCATCTTTACCATCTGTTAGTAATTCAACAGAGCAGAACCTCAAAACAAGAGGCACTCATCGAGCACAAGCTGGAATTAGTAGTGATATAAGGAATAGTACGCTTAAGAATGAAACAGTCAGCCGCAAATTTGCTTTACAAGATAAGCTTTGGTCCATTTATGCCGCTGGTAATACAGTGCCCATACCATTCTTAAGGGCAACAGATATATCACCTATTGCCCTCCTTTCAGAAAATGTGTTTGGTGGCATGCAACCGGATACAGGTGGAACTGGAACAGTAGAAGCATTGCAAGAACTTTTTAGTGGCGACGGCCAGTCCAAAAAAGGTCGCAGAGGAATAAATGAGATGCCCCTTCCTCCAAGCATTTGCCAAAGATTGACGTCTAGTTCTACTCTAATGAATTTGGCACAGGCTTTAGCTTATCATAAGATGTGTTACGAAGATATGCCACTGCAGGAGTTGCAAGCAACACAGGAGCAGCGAACTATTCAAAATCTCTCTGACACACTTAGAACCATTCTTCGGTTGTAG 2499 0.4558 MERSSFSPRNRNTRPKSDIYSTFVIHDDDEDETNRRRKAGSAEAQEDPYATMVFKDNGNDDDDDEDSFLPPLLKRLPKDFGGGASMDYDDEDDDESGDFGTMIVKSDRSRQRDRSSSGLTSPVGSTWKTGSYSQANPLNGEDDDEDDDGGGFSTFVMRSTVKSGERESVSGTMVRRTGGNDGGGGGSTMERAIASMQGVGEFGLGKQRKGSGSSQNDEGKQHSVTTKVSTSSIPDSVIREDPTTKYELLNELGKGSYGAVYKARDYRTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVADEALDEGQIAYICREALKGLDYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSSVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPAASEMLKHKFFEKWKVGSAAMFPKLEKARQVRASMALQVQTLAPASAGEQEPMIASILNDEYGDTVPSRPQNISVEEAAYISSHGTMRKLQKVDEVDNSEGDFGTMIVHRDELFKTTQDTDSASYKTAFTSGTGGRLSDPGVESLKVGDLNTASFRGSGSTTDTIQSSLPSVSNSTEQNLKTRGTHRAQAGISSDIRNSTLKNETVSRKFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSENVFGGMQPDTGGTGTVEALQELFSGDGQSKKGRRGINEMPLPPSICQRLTSSSTLMNLAQALAYHKMCYEDMPLQELQATQEQRTIQNLSDTLRTILRL 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02880 832 MobiDBLite consensus disorder prediction 208 238 - -
Trre10g02880 832 MobiDBLite consensus disorder prediction 98 114 - -
Trre10g02880 832 MobiDBLite consensus disorder prediction 115 138 - -
Trre10g02880 832 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 228 597 - -
Trre10g02880 832 SMART serkin_6 246 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02880 832 FunFam serine/threonine-protein kinase dst1 isoform X1 243 534 - -
Trre10g02880 832 MobiDBLite consensus disorder prediction 1 189 - -
Trre10g02880 832 ProSitePatterns Protein kinases ATP-binding region signature. 252 275 IPR017441 GO:0005524
Trre10g02880 832 CDD STKc_MAP4K3_like 245 500 - -
Trre10g02880 832 FunFam Aurora kinase A 239 327 - -
Trre10g02880 832 MobiDBLite consensus disorder prediction 21 43 - -
Trre10g02880 832 Pfam Protein kinase domain 246 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02880 832 Gene3D Transferase(Phosphotransferase) domain 1 242 531 - -
Trre10g02880 832 MobiDBLite consensus disorder prediction 641 680 - -
Trre10g02880 832 ProSiteProfiles Protein kinase domain profile. 246 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02880 832 MobiDBLite consensus disorder prediction 202 239 - -
Trre10g02880 832 SUPERFAMILY Protein kinase-like (PK-like) 243 501 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02880 Trre-Chr10 37431873 37444057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02880 7 832 MAP Kinase Kinase Kinase Kinase AT1G69220 59.393 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Trre10g02880 Pkinase 3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02880 - - gmx:100804995 1298.49