Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02815 ATGGAAGAGAAGAAGTTTGTTTGTAAGTATTGTAGCAAAAGGTATCCTTGTGGAAAATCTTTAGGTGGTCACATTAGGACTCATATGATGAGTGAAAATTCACTTCAAGCAAAAGAAGAAAAAAGAATCAATGCTAATAATGCTATGTTTAAGTTTGAAGATGGAAGAAAGAGAAAGAGATTGGATTTAGGGTCTAGTGGTAGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATGGAAACCTTATTTATGGTCTTAGAGAGAATCCCAAGAAAACATCAAGGTTTGTGCATTCCAATGTTGCTACTGTTCAAATGGAGAAATTCTGCAAAGAATGTGGAAAAGGTTTTCCATCATTGAAAGCTTTATGTGGTCACATGGCTTGTCACTCTGAGAAAGACAAAGGAACCAATCGGATTGAAAGTGTGTCTGGTGTCAGTGAAAAGCACAAATTGGTTATGGATAGTCAATCGGATACCGAGGCTTCGGTTCCGACTGATACACGGAGATCAAAAAGAATGAAGTTCAAGAATCTTAACGGCGGTGGTGGTGGTGGTGACAATAGCCATCCGCCTTCTTCGTCTTCGCTTCATTGGGGAAATAATTGTTCTTCTTCGATTTCCGAGGTTGAACAGGAGCAAGAAGATGTTGCTAGGTGCTTGATGATGTTGTCTAGAGATGCTACTTACAAGGGTCGTCTTGCTTTGGTGACAGAGTCTTCTGATAACAACTCGGTTGTTCTCGAAGGAAAATCGAAATCACCTTCTATTGATACCAAGTTTGCTGCTATCAAGAACTTTGTTGGTTCTAAAAACAATGCTTTTGAGTTCTCGGGGAAGAAGCCGAACAAGGATGCGAAATTGAAATCGGTTGAAATTGGTTATGTTTCTGATAATTCTGATTCTGGTTATTTCACATATGGTCCTAGAAAAGTAGAATCAGATGATTCGAGTGACGCGTTTTTCATGAATGATGTTAAGTCTTCAAAAGCTGGATTCATCTCTAGGTTTGAAGATCATGATTTTGATTCAAGGAAGAAGATAATGGGCAGAGAAAAAAGAAGCAGAAATAGTAATGAATTCAAGAAACTAGCTTTGGATGATTCAAGGAAGAAGCCAAATTTAGTTGAAAGTTCTAGCAAGAAGAAAACAAAAAATGGTACTTCTTATAGCAATGATGAAAACTATGAGAGTTTGAAAATTGAAAGAGAGAGTTTTTCTGAAGATTCAGCTTATGAAAGTGATGAAAATAGCACTGATAGTGATTCTTATCCTGCTCCACCAAAGACACAAAGCAATAGAAACATAAATTCAAAGACTAAGAAGTTAACAAGCAAAGGAAAGAAGAAAATGAAGTCAAAGAAAAGCAAAGAACATGAGTGTCCAATTTGCAACAAGATTTTTAGATCAGGACAAGCTTTAGGGGGTCACAAAAGGTCCCATTTTGTTGGAGGGAATGATGAAAACACTTTTGTGATTAGACCAGCTAATGGTGGTGCTGTTCAACCTGCTCCTGCTGCTAATCCTTGCTTAATTGATCTTAATCTACCTGCTCCTGATGATGAATAA 1572 0.3798 MEEKKFVCKYCSKRYPCGKSLGGHIRTHMMSENSLQAKEEKRINANNAMFKFEDGRKRKRLDLGSSGSGSGGGGGGGGDDGNLIYGLRENPKKTSRFVHSNVATVQMEKFCKECGKGFPSLKALCGHMACHSEKDKGTNRIESVSGVSEKHKLVMDSQSDTEASVPTDTRRSKRMKFKNLNGGGGGGDNSHPPSSSSLHWGNNCSSSISEVEQEQEDVARCLMMLSRDATYKGRLALVTESSDNNSVVLEGKSKSPSIDTKFAAIKNFVGSKNNAFEFSGKKPNKDAKLKSVEIGYVSDNSDSGYFTYGPRKVESDDSSDAFFMNDVKSSKAGFISRFEDHDFDSRKKIMGREKRSRNSNEFKKLALDDSRKKPNLVESSSKKKTKNGTSYSNDENYESLKIERESFSEDSAYESDENSTDSDSYPAPPKTQSNRNINSKTKKLTSKGKKKMKSKKSKEHECPICNKIFRSGQALGGHKRSHFVGGNDENTFVIRPANGGAVQPAPAANPCLIDLNLPAPDDE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02815 523 MobiDBLite consensus disorder prediction 418 441 - -
Trre10g02815 523 MobiDBLite consensus disorder prediction 60 83 - -
Trre10g02815 523 MobiDBLite consensus disorder prediction 345 380 - -
Trre10g02815 523 MobiDBLite consensus disorder prediction 152 209 - -
Trre10g02815 523 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Trre10g02815 523 MobiDBLite consensus disorder prediction 381 396 - -
Trre10g02815 523 ProSitePatterns Zinc finger C2H2 type domain signature. 462 482 IPR013087 -
Trre10g02815 523 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 523 - -
Trre10g02815 523 SMART c2h2final6 6 28 IPR013087 -
Trre10g02815 523 SMART c2h2final6 109 131 IPR013087 -
Trre10g02815 523 SMART c2h2final6 460 482 IPR013087 -
Trre10g02815 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 460 482 IPR013087 -
Trre10g02815 523 Pfam C2H2-type zinc finger 460 482 - -
Trre10g02815 523 Pfam C2H2-type zinc finger 111 133 - -
Trre10g02815 523 Pfam C2H2-type zinc finger 6 29 - -
Trre10g02815 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Trre10g02815 523 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Trre10g02815 523 MobiDBLite consensus disorder prediction 397 411 - -
Trre10g02815 523 MobiDBLite consensus disorder prediction 188 209 - -
Trre10g02815 523 SUPERFAMILY beta-beta-alpha zinc fingers 110 482 IPR036236 -
Trre10g02815 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Trre10g02815 523 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Trre10g02815 523 MobiDBLite consensus disorder prediction 442 456 - -
Trre10g02815 523 MobiDBLite consensus disorder prediction 345 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02815 Trre-Chr10 36844583 36846154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02815 1 523 C2H2 Transcription Factor Family AT1G26610 39.706 3.66e-88 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g02815 zf-C2H2_6 9.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02815 - - tpra:123908903 884.404