Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02770 ATGGACCGACCACCGTGGAATCAAGAAGAATCGGCAGTTGACGGTGGCCAAGCCGGGGGACTACCTACAACACACGCTTTAACTCTGCCGCCACGTACCGATAATCTTTTCAGCGGTGGTTTCAGCCCTGGTCCTATGACTCTACTTTCTAATTTATTGACTGACGGTGAAGATGGTAAGTCCTTCTCTCAGCTTCTTGCCGGCGCCATGGCGTCTCCGGCAGCAGCAACAGCTGGCTTGCTCGATTCACCTGGCTTCTTTTCACATCCTCAGGTGTCTTTTGGAATGTTACACCAGCCGCCGCAGGCACTGGCACAGGTCTCGGCTCAAGAAGGACAATCCAACACAAATATGAATAACCAAGCTGAACATTCATTGTCTGTATTAGCATCCACCGACCACGCTCCTGTCTCCGAACAAAGGCTACAATCTTCTTCGTTGAATGTTGATAAGCCTGCTGATGATGGTTACAATTGGAGGAAGTATGGACAGAAACATGTGAAAGGTAGCGAGTTTCCTCGAAGTTATTATAAATGCACACATCCTAACTGTCCTGTCAAGAAAAAGGTTGAGCGCTCGCTTGCTGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACAATCATCAACGTCCGAGTAACAAGCGATCAAAAGATACTATAACTTCAAATGACAGTTCAAATATCCAAGGGAATGCTGATTCGTCTTATCAACAGATGATGGATCCGGAATCTAGTCAGGCAACAGGTGAACATGTATCCGGAACAAGCAACAGTGAGGAAATTGGTGATCGTGGAACTGAAGTGGATGAAAAAAGACTCGAGCCTGACCCCAAAAGGAGAAATACAGAAATTGTGGTCGCTGATCCTGCAGCTTCTTCACATAGGACTATGGCGGAGCCTAGAATCATCGTGCAAACAACTAGTGAGGTTGATCTCTTAGACGATGGTTATCGATGGCGAAAATATGGACAAAAAGTTGTCAAAGGCAACCCTTATCCAAGGAGCTATTACAAATGTACAACACAAGGTTGTAATGTTCGAAAGCACGTAGAGAGGGCATCAACGGATCCTAAAGCCGTTATAACAACATACGAAGGAAAACATAATCATGATGTGCCAGCAGCTAAGACTAACAGTCACACTATCGCCAACAATAACGCTTCACAGTTTAAATCGCAAAATAACATCTCTGAGAAGCCTAACTTTGGCAGCATTGGTAATGGCGGCGGTAATGAGCAACAACCAGTTGCGCGTCTAAGGCTGAAGGAAGAGCGGATAGCTTAA 1287 0.4545 MDRPPWNQEESAVDGGQAGGLPTTHALTLPPRTDNLFSGGFSPGPMTLLSNLLTDGEDGKSFSQLLAGAMASPAAATAGLLDSPGFFSHPQVSFGMLHQPPQALAQVSAQEGQSNTNMNNQAEHSLSVLASTDHAPVSEQRLQSSSLNVDKPADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLAGHVTAIIYKGEHNHQRPSNKRSKDTITSNDSSNIQGNADSSYQQMMDPESSQATGEHVSGTSNSEEIGDRGTEVDEKRLEPDPKRRNTEIVVADPAASSHRTMAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNNASQFKSQNNISEKPNFGSIGNGGGNEQQPVARLRLKEERIA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02770 428 MobiDBLite consensus disorder prediction 203 284 - -
Trre10g02770 428 MobiDBLite consensus disorder prediction 133 151 - -
Trre10g02770 428 MobiDBLite consensus disorder prediction 390 428 - -
Trre10g02770 428 Gene3D WRKY domain 139 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 Gene3D WRKY domain 299 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 397 IPR044810 GO:0003700
Trre10g02770 428 SUPERFAMILY WRKY DNA-binding domain 306 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 MobiDBLite consensus disorder prediction 133 160 - -
Trre10g02770 428 ProSiteProfiles WRKY domain profile. 309 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 ProSiteProfiles WRKY domain profile. 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 MobiDBLite consensus disorder prediction 219 262 - -
Trre10g02770 428 SMART WRKY_cls 153 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 SMART WRKY_cls 314 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 MobiDBLite consensus disorder prediction 390 412 - -
Trre10g02770 428 FunFam WRKY transcription factor 33 301 367 - -
Trre10g02770 428 MobiDBLite consensus disorder prediction 263 284 - -
Trre10g02770 428 SUPERFAMILY WRKY DNA-binding domain 151 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 FunFam WRKY transcription factor 140 213 - -
Trre10g02770 428 MobiDBLite consensus disorder prediction 1 40 - -
Trre10g02770 428 Pfam WRKY DNA -binding domain 315 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g02770 428 Pfam WRKY DNA -binding domain 154 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02770 Trre-Chr10 36136001 36138959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02770 27 427 WRKY Transcription Factor Family AT2G03340 50.888 1.25e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre10g02770 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02770 - - gmx:100127369 597.816