LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g02769	ATGCTTCCAGAATTTTGTCAGGCAGCAATTGAACATCTTTCTGGAACAAGAGACAATCAAGTAGTAGCTCATAGTGAAATTGATGAGATAAACGGCCAGCGAGATCCCATAAGGAGGAATGTCGAAAAGACGATACTCATCGTGAAAACAACTAGTGAAGTGGATATTTTGGATGATGGTTTTAGATGGCAAAAATATGGTCAGAAATATATCAAAGGACACTCTTACCCTAGGAGTTATGTCAAATGTGCAACACCGGGTTGCAACATTCAGAAACATATACAGAGGTATTCGAGGGATCCTAAAGCAGTCATAACGATATACAAAGGAGGAAAACATAATCATGATGTGCCAACTACTAAGACTAACAGCCAAAATATTTCCATCAATAATGCTTCGCAGTTTAAATCACAAAATATCAATTTTGTGAAGCCTACTTTTGGAAATAATGGTATTGCAGCAACAACGATTGATCTAACAGCTTGTAGCACATCTGAGACTGCAGATCCTATCATCATACAAACAACTAGTGATGTTGATCTCTTAGATGATGGTTATAGATGGCGAAAATATGGGCAGGAACATATCAAATGA	594	0.3737	MLPEFCQAAIEHLSGTRDNQVVAHSEIDEINGQRDPIRRNVEKTILIVKTTSEVDILDDGFRWQKYGQKYIKGHSYPRSYVKCATPGCNIQKHIQRYSRDPKAVITIYKGGKHNHDVPTTKTNSQNISINNASQFKSQNINFVKPTFGNNGIAATTIDLTACSTSETADPIIIQTTSDVDLLDDGYRWRKYGQEHIK	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g02769	197	SMART	WRKY_cls	57	117	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre10g02769	197	ProSiteProfiles	WRKY domain profile.	177	197	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre10g02769	197	ProSiteProfiles	WRKY domain profile.	52	118	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre10g02769	197	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	171	197	IPR044810	GO:0003700
	Trre10g02769	197	Pfam	WRKY DNA -binding domain	58	115	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre10g02769	197	Gene3D	WRKY domain	170	197	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre10g02769	197	Gene3D	WRKY domain	42	119	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre10g02769	197	SUPERFAMILY	WRKY DNA-binding domain	174	197	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre10g02769	197	SUPERFAMILY	WRKY DNA-binding domain	49	118	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g02769	Trre-Chr10	36089606	36091735	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g02769	34	197	WRKY Transcription Factor Family	AT2G03340	34.247	4.41e-29	110

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Trre10g02769		WRKY	1.5e-18	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g02769	-		-	gmx:100127369	166.007