Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02768 ATGTATAGGAGATATTACAAATGTGCAACACCGGGTTGCAACATTCAAAAGCATATACAGAGGTATTCGAGGGATCCTAAAGATGTCATTACGACATACAAAGGAGGAAGGCATAATCATGTTGTGCCAATACCTATGACTAACAACTACAATATTGTCAACAATAACGCTTCGCAGTTTAAATCACAAAATATCAATTTTGAGAAGCCTAGTTTTGGAAATAATGGTATTGCCGCAACAACAATTAATCTAACAGCTTGTAGCACATCTGAGACTAAAGGAGCTACTACAAATGTGCAACACCAGGTTGCAACATTAGGAAGCATGTAG 330 0.3727 MYRRYYKCATPGCNIQKHIQRYSRDPKDVITTYKGGRHNHVVPIPMTNNYNIVNNNASQFKSQNINFEKPSFGNNGIAATTINLTACSTSETKGATTNVQHQVATLGSM 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02768 109 Gene3D WRKY domain 1 44 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g02768 109 SUPERFAMILY WRKY DNA-binding domain 2 41 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g02768 109 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 64 IPR044810 GO:0003700
Trre10g02768 109 Pfam WRKY DNA -binding domain 3 40 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g02768 109 ProSiteProfiles WRKY domain profile. 1 43 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g02768 109 SMART WRKY_cls 1 42 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02768 Trre-Chr10 36086422 36088695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02768 3 70 WRKY Transcription Factor Family AT2G03340 44.118 5.87e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre10g02768 WRKY 8.3e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02768 - - aip:107643570 94.3597