Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02752 ATGGAACAACAACAACAACAACAAGACTCAACAAACAACACTAACCAAAATCACACAACAAAAACAACAACCTTAATTAAAACAAATGGAACAACAAACACTTATCAACATCATCAATATTATCAACAACATCATCAACAACATCAAAATCAACTTCAACAATACTCAACTCAACTTGGTTTCTTCAACAACAAAAACTATCAAAGATATTACCCTGCTCTTCTTCCTTTACCTTCACTTCAACAACTACCTTTGATTCCATCTTTTCCTCAAAATCATAACTTTAAACTAAAAACCCATTTGCATAAACTTCCATGCAAACTCAATACTTCTCCTTCATCAGATTACAATCTCTCTCAACTATCACTTGCTTCTGCTCCAAAGGAACTTCAGAAGCAAACAAAATCATCCTTTAAAGAAGTTGATGAGAAAAAGCTGATTTCAACAAGGAAGCCACAAGAAGTGATTGTTGCAATAAGGCCAGATTCAGGTGGACAAGAAGGTCCTGTGATATCTCTCCTTGCAAACCACTTTTTGGTTAAGTTTGATTCATCACAAAAAATATATCATTACAATGTTGAAATTACTCCTCATCCCTCTAAAGATGTTGCTAGAGCAATCAAACATAAATTGGTGCATAACAATTCCGAGATTTTATCAGGCGCTTTGCCGGCGTATGATGGGAGGAAAAATCTTTATAGTCCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTTCCAATCCCAACTAGCAAATCGACGTCACTTTATGGAGAAACGAATGATACGAAAGAGAAGCGTGAACAGCATAAACTTTTTCGGATAAATATCAAACTAGTCTCGAAGATTGATGGAAAGGAGTTGGCTAACTACTTGAGCAAAGATGGTGACGAAGGGATTCCACTTCCGCAGGATTATTTACATGCTTTGGATGTTGTTTTGAGGGAAAGTCCGACCGAGAAATGTATACCTGTTGGAAGGTCATTCTATTCGAGTTCGATGGGAAGAGGAAAAGATATTGGTGGTGGAGCTGTTGGATTGAGAGGCTTTTTTCAGAGTCTTAGACCAACTCAACAAGGACTTGCTCTCAATGTTGACTTTTCAGTAACCGCTTTCCATGAGAGTATAGGAGTTGTTCCGTATTTGCAGAAACGTCTCGAGTTTTTTAGAGACCTTTCTCAAAGGAAGACAACTCAGTTAACTTGCGAAGAAAGGAAGGAAGTGGAGAAAGCATTGAAGAACATTAGAGTCTTTGTTTGCCATAGAGAAACTGTTCAGAGATACCGTGTCTACGGTTTAACTGAGGAGGCAACTGAAAATATTTGGTTTCCTGATAGAGACGGAAAGAATCTGAGGCTAATGAGTTACTTTAAAGATCACTATAACTATGACATTCAATTCAGAAAGTTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTCTGTGTGATCTGTGAAGGACAGAAGTTCCTTGGGAAACTGTCGGATGATCAGACGGCAAAAATACTCAAGATGGGCTGTCAAAGACCGGGAGAACGAAAAGCCATCATCGAAGGAGTCATGAGAGGAAATGTTGGTCCTACCAGTGGTGACCAGGAAGGGGAATTCAAGCTCCAAGTCTCAAGAGAAATGACAAAGTTGACTGGGAGAATTCTTTACCCTCCCAAACTAAAGCTCGGAGACGGAGGTCATGTGAGAAACCTGACTCCTTCACGTCACGATCGCCAGTGGAACCTACTAGATGGCCATGTCTTTGAAGGAACAACAATTGAAAGGTGGGCACTAATAAGTTTTGGAGGTACACCTGAGCAAAAATCTCATATCCCAAGATTCATAAACCAGTTAACTCAAAGATGCGAACAATTAGGCATTTTTCTTAATAAGAACACAGTTATTAGTCCACAGTTTGAATCAATCCAAGTTCTTAACAATGTTACACTTTTGGAATCTAAGCTCAATAGAATCCAAAGGATTGCCTCAAACAAGCTACAGCTTCTTATTTGCATAATGGAGAAAAAACACAAAGGGTATGGAGACTTGAAACGAATTGCCGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGCTTGTATCCTAATCTCATCAAATTAAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTCGGTGGATGTACAGTTGCTTTGTACAACTCGCTTCCTTCTCAATTACCTCGTCTTTTCAACATTGATGAACCAGTGATGTTCATGGGAGCCGATGTGACACATCCTCATCCTCTTGATGATTCGAGTCCATCTGTTGCTGCTGTTGTCGGTAGCATGAATTGGCCAACAGCAAACAAATATATTTCAAGAATAAGGTCTCAAACACATAGACAAGAAATCATTGCAGATCTTGGCGCAATGGTTGGAGAATTGCTTGACGATTTTTATCAAGAAGTAGAAAAGCTCCCCAACAGAATAATTTTCTTCCGAGACGGAGTTAGCGAAACTCAATTTCACAAAGTGTTGCAAGAGGAACTTCAATCCATAAAACAAGCATGTTCATCATCAAGGTTTCATGGTTATAAACCTTTTATTACTTTTGTAGTTGTACAAAAGAGACATCACACAAGGTTGTTTCCTGCCAACACCGATCAATCTTCGACACGGAACAATATTCATTTTCAATACGAAAATATTCCTCCAGGGACTGTGGTTGATTCTGTGATTACTCATCCAAAGGAATTTGATTTCTATCTGTGTAGTCATTGGGGTGTGAAAGGAACAAGTAGGCCAACTCATTACCATGTTTTGTGGGATGAAAATCGGTTCACTTCCGACGAACTTCAGAAGCTGGTTTACAATTTGTGCTTTACTTTTGTTAGGTGTACTAAGCCAATTTCTTTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGTAGACTCTACCTTGAAAGATCAGAGTCATTAGGTTTGTTCAAAAGTGCTTCTACATTATCAAGAGCTGCTCCTCCAAAGACACCACCTCTACCTAAACTTAGTGAAAACATAAAGAAGCTCATGTTTTACTGCTAG 3084 0.3885 MEQQQQQQDSTNNTNQNHTTKTTTLIKTNGTTNTYQHHQYYQQHHQQHQNQLQQYSTQLGFFNNKNYQRYYPALLPLPSLQQLPLIPSFPQNHNFKLKTHLHKLPCKLNTSPSSDYNLSQLSLASAPKELQKQTKSSFKEVDEKKLISTRKPQEVIVAIRPDSGGQEGPVISLLANHFLVKFDSSQKIYHYNVEITPHPSKDVARAIKHKLVHNNSEILSGALPAYDGRKNLYSPIEFQNDKLEFYISLPIPTSKSTSLYGETNDTKEKREQHKLFRINIKLVSKIDGKELANYLSKDGDEGIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRGKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVVPYLQKRLEFFRDLSQRKTTQLTCEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENIWFPDRDGKNLRLMSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIIEGVMRGNVGPTSGDQEGEFKLQVSREMTKLTGRILYPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVFEGTTIERWALISFGGTPEQKSHIPRFINQLTQRCEQLGIFLNKNTVISPQFESIQVLNNVTLLESKLNRIQRIASNKLQLLICIMEKKHKGYGDLKRIAETSVGVVSQCCLYPNLIKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFNIDEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFHKVLQEELQSIKQACSSSRFHGYKPFITFVVVQKRHHTRLFPANTDQSSTRNNIHFQYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENRFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFKSASTLSRAAPPKTPPLPKLSENIKKLMFYC 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02752 1027 Gene3D paz domain 372 499 - -
Trre10g02752 1027 SUPERFAMILY PAZ domain 373 531 IPR036085 GO:0005515
Trre10g02752 1027 MobiDBLite consensus disorder prediction 1 22 - -
Trre10g02752 1027 Gene3D - 560 736 - -
Trre10g02752 1027 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 153 990 - -
Trre10g02752 1027 ProSiteProfiles Piwi domain profile. 674 988 IPR003165 GO:0003676
Trre10g02752 1027 FunFam protein argonaute 10-like 745 1027 - -
Trre10g02752 1027 Gene3D - 746 1027 IPR036397 GO:0003676
Trre10g02752 1027 Pfam PAZ domain 389 511 IPR003100 GO:0005515
Trre10g02752 1027 SUPERFAMILY Ribonuclease H-like 658 988 IPR012337 -
Trre10g02752 1027 FunFam Argonaute 10 560 736 - -
Trre10g02752 1027 CDD PAZ_argonaute_like 383 494 - -
Trre10g02752 1027 SMART Piwi_a_2 674 988 IPR003165 GO:0003676
Trre10g02752 1027 FunFam Protein argonaute 7 373 499 - -
Trre10g02752 1027 Pfam N-terminal domain of argonaute 171 317 IPR032474 -
Trre10g02752 1027 SMART PAZ_2_a_3 386 526 IPR003100 GO:0005515
Trre10g02752 1027 CDD Piwi_ago-like 544 987 IPR045246 -
Trre10g02752 1027 ProSiteProfiles PAZ domain profile. 386 495 IPR003100 GO:0005515
Trre10g02752 1027 SMART DUF1785_2 326 378 IPR014811 -
Trre10g02752 1027 Pfam Piwi domain 675 985 IPR003165 GO:0003676
Trre10g02752 1027 Pfam Argonaute linker 1 domain 327 376 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02752 Trre-Chr10 35753624 35757960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02752 159 1027 Eukaryotic Initiation Factors Gene Family AT1G48410 41.768 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02752 K11593 - gmx:100797755 1712.58