Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02720 ATGTTTCATGTTTGTCTTAGATGTCGCAAAACCTTCAAAACTCAACTTGGTTTGCGTGTCCATGAAGGTTCTCACACTGAAACACGATGCGACCAGTGCGGAGAAATATTCTCAACTCGTCAAGCATGTGGTCGTCATAGGGAGACTCATCAAATAATAGTATATCATCCACCACCACATCCACCGATTCCAGAAATACCTTTCCAGTGCAATTGTTGTGCAAGCAAATTTTCCACTGCAGAAGAACTGGAAAACCATAAAGCTAATCGCCACAGAGTTTGA 282 0.422 MFHVCLRCRKTFKTQLGLRVHEGSHTETRCDQCGEIFSTRQACGRHRETHQIIVYHPPPHPPIPEIPFQCNCCASKFSTAEELENHKANRHRV 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02720 93 Gene3D Classic Zinc Finger 2 91 - -
Trre10g02720 93 PANTHER TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED 3 91 - -
Trre10g02720 93 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Trre10g02720 93 SMART c2h2final6 68 91 IPR013087 -
Trre10g02720 93 SMART c2h2final6 28 50 IPR013087 -
Trre10g02720 93 SMART c2h2final6 3 25 IPR013087 -
Trre10g02720 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 50 IPR013087 -
Trre10g02720 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 3 30 IPR013087 -
Trre10g02720 93 ProSitePatterns Zinc finger C2H2 type domain signature. 70 91 IPR013087 -
Trre10g02720 93 SUPERFAMILY beta-beta-alpha zinc fingers 3 50 IPR036236 -
Trre10g02720 93 ProSitePatterns Zinc finger C2H2 type domain signature. 5 25 IPR013087 -
Trre10g02720 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02720 Trre-Chr10 35443029 35443310 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g02720 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02720 - K09228 msam:119912029 62.3882