Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02719 ATGTTTTGTCTTAGATGTCGCGAAACCTTCAAAACTCAACTTGGTTTGCGTGTCCATGAAGGTTCTCACACTGAAACACGATGCGACCAGTGCGGAGAAATATTCTCAACTCGTCAAGCTTGTGGTCGTCATAGGGAGACTCATCAAATAATAGTATATCATCCACCACCACATCCACCGATTCCAGAAATACCTTTCCAGTGCAATTGTTGTGCAAGCAAATTTTCCACTGCAGAAGAACTGGAAAACCATAAAGCTAATCGCCACAGAGTTTGA 276 0.4275 MFCLRCRETFKTQLGLRVHEGSHTETRCDQCGEIFSTRQACGRHRETHQIIVYHPPPHPPIPEIPFQCNCCASKFSTAEELENHKANRHRV 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02719 91 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Trre10g02719 91 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 48 IPR013087 -
Trre10g02719 91 Gene3D Classic Zinc Finger 1 89 - -
Trre10g02719 91 SUPERFAMILY beta-beta-alpha zinc fingers 2 48 IPR036236 -
Trre10g02719 91 ProSitePatterns Zinc finger C2H2 type domain signature. 68 89 IPR013087 -
Trre10g02719 91 SMART c2h2final6 1 23 IPR013087 -
Trre10g02719 91 SMART c2h2final6 66 89 IPR013087 -
Trre10g02719 91 SMART c2h2final6 26 48 IPR013087 -
Trre10g02719 91 ProSitePatterns Zinc finger C2H2 type domain signature. 3 23 IPR013087 -
Trre10g02719 91 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 91 IPR013087 -
Trre10g02719 91 ProSiteProfiles Zinc finger C2H2 type domain profile. 1 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02719 Trre-Chr10 35428931 35429206 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g02719 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02719 - K09228 cpoc:100733315 61.6178