Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02718 ATGTTTCATGTTTGTCTTAGATGTCGCAAAACCTTCAAAACTCAACTTGGTTTGCGTGTCCATGAAGGTTCTCACACTGAAACACGATGCGACCAATGCGGAGAAATATTCTCATCTCGTCAAGCTTGTGGTCGTCATAGGGAGACTCATCAAATAATAGTATATCATCCACCACCACATCCACCGATTCCAGAAATACCTTTCCAGTGCAATTGTTGTGCAAGCAAATTTTCCACTGCAGAAGAACTGGAAAACCATAAAGCTAATCGCCACAGAGTTTGA 282 0.4184 MFHVCLRCRKTFKTQLGLRVHEGSHTETRCDQCGEIFSSRQACGRHRETHQIIVYHPPPHPPIPEIPFQCNCCASKFSTAEELENHKANRHRV 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02718 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 50 IPR013087 -
Trre10g02718 93 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Trre10g02718 93 SMART c2h2final6 68 91 IPR013087 -
Trre10g02718 93 SMART c2h2final6 28 50 IPR013087 -
Trre10g02718 93 SMART c2h2final6 3 25 IPR013087 -
Trre10g02718 93 SUPERFAMILY beta-beta-alpha zinc fingers 3 50 IPR036236 -
Trre10g02718 93 Gene3D Classic Zinc Finger 2 91 - -
Trre10g02718 93 PANTHER KRAB AND ZINC FINGER DOMAIN-CONTAINING 3 89 - -
Trre10g02718 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 3 30 IPR013087 -
Trre10g02718 93 ProSitePatterns Zinc finger C2H2 type domain signature. 70 91 IPR013087 -
Trre10g02718 93 ProSitePatterns Zinc finger C2H2 type domain signature. 5 25 IPR013087 -
Trre10g02718 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02718 Trre-Chr10 35420957 35421238 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g02718 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02718 - K09228 cpoc:100733315 62.3882