Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02715 ATGGAAAGTAGAACATGCTCTGAACTCCCACCTGGATTCAGGTTTCATCCAACTGATGAAGAATTAATTGTTTACTACCTTTGTAACCAAGCAACATCACAACCATGTCCTGCATCTATCATTCCAGAAGTTGATATCTATAAATTTGATCCTTGGGAATTACCAGATAAATCAGACTTTGGAGAAAATGAATGGTATTTTTTTAGTCCAAGAGAGAGAAAATATCCAAATGGGGTTAGACCAAACAGAGCAACTGTTTCTGGGTATTGGAAAGCAACTGGAACAGATAAATCAATATTTAGTGGTTCTAAGCATATTGGGGTTAAGAAAGCTTTGGTTTTTTACAAAGGTAGACCACCAAAGGGAATTAAAACAGATTGGATTATGCATGAATATAGGTTAATTGGATCAAGAAAACAAGCCAATAGACAAATTGGATCCATGAGGCTAGATGATTGGGTTTTATGTAGAATCTATAAGAAGAAAAACATGACAAAATCATTGGAGACAAATGAGGACTACACAACAAACCAAATGAATATGACACAAACAAATGATGATAGTGAACAAGAATTGGTGAAATTTCCAAGGACATGTTCTCTTACTAATCTTTTGGAAATGGATTATTTGGGACCAATATCACAAATATTATCAGATGGATCATATAATTCAACTTTTGAATTTCAAATTAATACTGCACATGGTGGATTAATGGACCCATTTGTAAAATCACAAATGGTTGAAATGCCTAAAAACAACCCTTATGAAGGTGATTTAGAGAAATACAATGTGAAACAAAATAGCAGCCTTGGGAACCAAGTATTTGATCAAAGGGAATAA 840 0.3381 MESRTCSELPPGFRFHPTDEELIVYYLCNQATSQPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKSIFSGSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLIGSRKQANRQIGSMRLDDWVLCRIYKKKNMTKSLETNEDYTTNQMNMTQTNDDSEQELVKFPRTCSLTNLLEMDYLGPISQILSDGSYNSTFEFQINTAHGGLMDPFVKSQMVEMPKNNPYEGDLEKYNVKQNSSLGNQVFDQRE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02715 279 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Trre10g02715 279 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 211 - -
Trre10g02715 279 FunFam NAC transcription factor 18 165 - -
Trre10g02715 279 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Trre10g02715 279 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Trre10g02715 279 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02715 Trre-Chr10 35389230 35390650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02715 1 216 NAC Transcription Factor Family AT1G69490 67.544 2.60e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g02715 NAM 4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02715 - - gmx:732552 469.929