Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02710 ATGACTATGTTCGTGGTGAATCCAAATCATTTCACAAAACTTGATGAAATCGATTCTGACAAGGCTTTTTATAATGTTAGAGTGAAAATATTAAGATTGTGGGAAGTTTCTGATTTTAATCGTGCTAACAATCCTTTCTCTATTGAAATGGTTTTAATGGATTCTGAGGGGGGGAGGATTCACGCAACTATTAAGAAAACATTAATTTACAAATTTAAGGATAATTTAGTTGAAGGGAATGTATATGGTTTTGACAATCTTGGTGTTTCAGCTAATGGTGGAGCTTATCGCAGTACTCATCATCGTTATAAGTTGAATTTTCAGTTTTCATCAATGGTACAAAAGCTTTCTAATGTTGATATTAAAGGATCTGAGTTTAACTTTGTACATATTTCTGAAGTTGTTGGAGGTTCTTATGACACTGATTATTTAGTTGATGTTATTGGGATTTTGACTGGCGTTGGAACTGAGCGTGAAGTCACAAACCAAAATGGAAGCACCACTAAGTTGAATGTGATTGCTTTAGAGGCTCAAGGGCATAAACTGCAGCGTACTTTGTTTGGACCCTATGTTGATGCTAAGCCATTTCAAGACAAGATACACATACAGAACTATATGAACTGTAGCAAGTTGTACTTTAACCCTAACTGCCCAGAAAGTGCACTATTGAGGCAAATCTTGCCTGAAAGTGTAGAGAATCTTTCTCCAATCACTCTTACTCAAATCCAGATGGAGCCTGTTGTTAGCCCAATGGATGAGTTTTTATTCAACACACCAAGAATCACTTTGCAAGGACTTAAAGATTCAACAACTGAATCAGTTCATGTTGTATGTGCTACTGTCAAGAAGATTTTGAACCCAAATTGTTTTTGGTATACTGCATGTGTTTGTAACAAATCTGTCATACCTGATTCAAACATGTTTTTTTGTGAAAAATGCAACAAGCATGTCATGAAGGTTTTCCCTAGGTATTGTATGAAGGTCAGGGTTATGGACCACACATATTCCGCCAGTTTTGTGATATTTGACAGAGATGCAGCCTCATTGTTCAACATTAGTTGTGCTGAGATGTTAAATGAGGCTCAAAGGAACGGCACTGTTGGAGTTGTTCCACCTCAAATTTCAAAGCTTATTGATATGAATTTTTTGTTCAAGTGGGATAATGAGGAAGCTTCCATTAGCAAACTAAACAATGAGGTTGGTTCTTTGAGTACTTTGTTGGAAAAAGGAAAACATCTTTTGGGGTGTAGTACAAACAACATCCTTTCTCAGGATTCACTTTCCTTGACTGGGAGTAGTGGCAAGGGAAAGGGAAAGGAAACAGCAAATTTTAGCAGTCCTGTTCCAATAACTCAAGATTTAATGAAGAAATTTACCTCAACTGTTATCAACCTTGAAGATGATTCTCTTTCTGCATTTGATCTAATTAAGACTCAAGAAAGTCAGACTTATGTTCTATCTTGCAAGGATTTACAGTCATTGAGTGGAAGCAGTTTGGAATCTGAAGGAAAAGATGTTGTAGTTCATGGTACTCCTGTTATATATTTACTTCAAACCAATCCTACTGTTGTTGTCAACAGTGCTAGTGAGGGTACAAAGATTGAAAAAACTGTTGTAGCTGATGATGAGGTTGTATCAAGTGGAGAAAATGATAATATTGTGGAGAAGGAGTTGTGTGAATTAAGTGGAGGCAAAGTAGATGCAAAGGTTTTAGAGGCTACTCCTGTTGGACTTCACCAACCATTGGAGGCAAGTGAAGATTTGGCTGTTGTAAACCTTGAGGATGATTCCTCTCAAAAAGATAAGGTGTTTAATACTCCCAAGGCATGTTCATCAAATGGATCAAAGGGAGTTAAGGGCCGGAAGTTTGTGAAGAGAGTTTCACCTGATAAAGTTGCCGAGGAAGACAATGCACCAATTAAGCTATTGAAAAGGGTTATTAAACAAGAGAAAATGTGA 1959 0.3696 MTMFVVNPNHFTKLDEIDSDKAFYNVRVKILRLWEVSDFNRANNPFSIEMVLMDSEGGRIHATIKKTLIYKFKDNLVEGNVYGFDNLGVSANGGAYRSTHHRYKLNFQFSSMVQKLSNVDIKGSEFNFVHISEVVGGSYDTDYLVDVIGILTGVGTEREVTNQNGSTTKLNVIALEAQGHKLQRTLFGPYVDAKPFQDKIHIQNYMNCSKLYFNPNCPESALLRQILPESVENLSPITLTQIQMEPVVSPMDEFLFNTPRITLQGLKDSTTESVHVVCATVKKILNPNCFWYTACVCNKSVIPDSNMFFCEKCNKHVMKVFPRYCMKVRVMDHTYSASFVIFDRDAASLFNISCAEMLNEAQRNGTVGVVPPQISKLIDMNFLFKWDNEEASISKLNNEVGSLSTLLEKGKHLLGCSTNNILSQDSLSLTGSSGKGKGKETANFSSPVPITQDLMKKFTSTVINLEDDSLSAFDLIKTQESQTYVLSCKDLQSLSGSSLESEGKDVVVHGTPVIYLLQTNPTVVVNSASEGTKIEKTVVADDEVVSSGENDNIVEKELCELSGGKVDAKVLEATPVGLHQPLEASEDLAVVNLEDDSSQKDKVFNTPKACSSNGSKGVKGRKFVKRVSPDKVAEEDNAPIKLLKRVIKQEKM 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02710 652 CDD RPA1_DBD_C 277 385 IPR047192 -
Trre10g02710 652 Gene3D - 255 423 IPR012340 -
Trre10g02710 652 SUPERFAMILY Nucleic acid-binding proteins 126 233 IPR012340 -
Trre10g02710 652 SUPERFAMILY Nucleic acid-binding proteins 259 385 IPR012340 -
Trre10g02710 652 SUPERFAMILY Nucleic acid-binding proteins 10 119 IPR012340 -
Trre10g02710 652 PANTHER OS03G0429900 PROTEIN 14 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre10g02710 652 Pfam Replication factor-A C terminal domain 278 363 IPR013955 -
Trre10g02710 652 Gene3D - 119 235 IPR012340 -
Trre10g02710 652 CDD RPA1_DBD_A_like 26 113 - -
Trre10g02710 652 Gene3D - 10 118 IPR012340 -
Trre10g02710 652 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02710 Trre-Chr10 35320807 35323760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02710 32 334 Core DNA Replication Machinery Family AT2G06510 23.684 7.43e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02710 - - tpra:123915045 728.398