Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02698 ATGTTTTCCTCTGCTTATGCTTATGGTGGAGGTTGGATTAATGCACATGCAACCTTCTATGGAGGAAGTGATGCATCAGGAACAATGGGTGGGGCATGTGGATATGGAAACCTTTACAGTCAAGGGTATGGAACAAACACAGCTGCTTTAAGCACAGCTTTGTTTAACAGTGGTTTAAGCTGTGGTTCTTGTTTTGAGATTATGTGTGTTGGTGACCGTAAATGGTGTCTTCCTGGTTCCATTTTGGTTACTGCTACTAATTTCTGTCCTCCAAACAATGCCTTACCTAATAATAATGGTGGATGGTGTAACCCTCCTTTGCATCACTTTGATCTTGCTCAACCTGTTTTTCTAAAAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGGTACCCTGCAGAAGAAGGGGAGGAATTAGGTTCACAATCAATGGACATTCCTACTTCAATTTAGTTCTAGTAACAAATGTTGGAGGTGCTGGAGATGTACATTCAGTGGCTATTAAAGGGTCTAGAACAGGGTGGATGCCAATGTCAAGAAACTGGGGACAAAATTGGCAAAGCAACAATTATCTTAATGGCCAAACCTTGTCTTTCAAGGTCACAACAAGTGATGGCAAAACAGTAATTTCCAACAATGTTGCCCCATCTGGTTGGTCCTTTGGTCAAACCTACACTGGTGCTCAATTCCGCTAG 708 0.4167 MFSSAYAYGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIMCVGDRKWCLPGSILVTATNFCPPNNALPNNNGGWCNPPLHHFDLAQPVFLKIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQTLSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02698 235 FunFam Expansin 2 138 - -
Trre10g02698 235 SMART dpbb_1 47 132 IPR007112 -
Trre10g02698 235 Gene3D - 1 138 IPR036908 -
Trre10g02698 235 Pfam Expansin C-terminal domain 143 220 IPR007117 -
Trre10g02698 235 Gene3D - 142 234 IPR036749 -
Trre10g02698 235 PRINTS Expansin signature 141 153 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin signature 42 56 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin signature 117 130 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin signature 188 209 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin signature 81 91 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin signature 153 174 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin signature 217 233 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin signature 100 117 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin signature 69 80 IPR002963 GO:0009664
Trre10g02698 235 CDD DPBB_EXPA_N 11 137 - -
Trre10g02698 235 FunFam Expansin 142 234 - -
Trre10g02698 235 Pfam Lytic transglycolase 47 132 IPR009009 -
Trre10g02698 235 SUPERFAMILY Barwin-like endoglucanases 7 160 IPR036908 -
Trre10g02698 235 PANTHER EXPANSIN-A15 7 234 IPR002963 GO:0009664
Trre10g02698 235 PRINTS Expansin/Lol pI family signature 179 193 IPR007118 GO:0005576
Trre10g02698 235 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Trre10g02698 235 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Trre10g02698 235 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Trre10g02698 235 PRINTS Expansin/Lol pI family signature 11 26 IPR007118 GO:0005576
Trre10g02698 235 PRINTS Expansin/Lol pI family signature 29 47 IPR007118 GO:0005576
Trre10g02698 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 152 231 IPR007117 -
Trre10g02698 235 SUPERFAMILY PHL pollen allergen 139 231 IPR036749 -
Trre10g02698 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 30 142 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02698 Trre-Chr10 35112970 35114381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02698 1 235 Expansin Gene Family AT2G03090 84.255 2.99e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02698 - - gmx:100527059 456.062