Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02690 ATGGATGATGATGATGATATTATGGAAGGAAAAGGTTCTTATTGTAGTGAAGATGGAGAAAATAGTGAGAGAACAAATCATCATCATAATATTAACTTCAATGATGAGTTAGAAAACCCTAATGGAAGTGGTAAAGAAGAAGGTAATGGGCAATCTAGTAAATGTGCAAGAGGACATTGGAGACCTGCTGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAGAATTGGAATCTCATAGCTGAAAATTTGGAAGGAAGATCTGGCAAGAGTTGTAGGCTAAGATGGTTCAACCAATTGGATCCAAGAATCAATAGAAGAGCATTCAATGAAGAAGAGGAAGAAAGACTAATGCAAGCACATAGAATTTATGGAAACAAATGGGCCATGATAGCAAGACTATTCCCAGGAAGAACAGACAATGCTGTAAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCCAATGCATATAGGAGAAGAAGATTAAGCCAAAATGTTTACAGAAGAATGGATCAAAATCCAAGCTTTATCTGCAGGGACACTACAACAATGGAAACAGAATCATCATCACCTTATTTTCTCAATGGAGCCCCACTTGGTAATAGTATGTCCATTTTCCCATATGCTACTTCTTTCCAATATGGTGTTCATGGTGGTGGGGTTGATTATGGTTTAAATGTTTTACCTCACATGAGTGGTGAGAGAGAACCTATTCAAGGACCCCTACATGTTGGTCTCTATGCTCAACAAGCACCATTTGATTTCTTCTCTGGTGGTAGAAATAATGGCATGGTAGTGAAAGAGTCTTTCAATCATAATAACAATTATTGGGATGGGACAAACAATGAATATCAACAACATCAACAACAATTATCTAGTTTCTACCATCATTATCCTCAACAACAATATCTTATGTCAATGCAACAACAAAACAATCACAATATTTACAATTTCTCAAATTCATCATCATCATCAACACATCATCATAATGCAGAAAACAGTGACAAAGTTGTGATTGGTGAGACCAAAGATGCTGTTCAAACTCCTCCTCAATTTTTTGACTTCCTTGGAATAGGTGCTACATGA 1110 0.364 MDDDDDIMEGKGSYCSEDGENSERTNHHHNINFNDELENPNGSGKEEGNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFNEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSNAYRRRRLSQNVYRRMDQNPSFICRDTTTMETESSSPYFLNGAPLGNSMSIFPYATSFQYGVHGGGVDYGLNVLPHMSGEREPIQGPLHVGLYAQQAPFDFFSGGRNNGMVVKESFNHNNNYWDGTNNEYQQHQQQLSSFYHHYPQQQYLMSMQQQNNHNIYNFSNSSSSSTHHHNAENSDKVVIGETKDAVQTPPQFFDFLGIGAT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02690 369 MobiDBLite consensus disorder prediction 35 50 - -
Trre10g02690 369 Pfam Myb-like DNA-binding domain 60 120 - -
Trre10g02690 369 Gene3D - 110 180 - -
Trre10g02690 369 FunFam MYB transcription factor 57 108 - -
Trre10g02690 369 FunFam MYB transcription factor 110 181 - -
Trre10g02690 369 SMART sant 56 105 IPR001005 -
Trre10g02690 369 SMART sant 108 156 IPR001005 -
Trre10g02690 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 103 IPR017930 -
Trre10g02690 369 SUPERFAMILY Homeodomain-like 56 150 IPR009057 -
Trre10g02690 369 CDD SANT 60 101 IPR001005 -
Trre10g02690 369 Gene3D - 57 108 - -
Trre10g02690 369 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Trre10g02690 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Trre10g02690 369 CDD SANT 111 151 IPR001005 -
Trre10g02690 369 PANTHER MYB PROTEIN-RELATED 57 319 - -
Trre10g02690 369 MobiDBLite consensus disorder prediction 322 336 - -
Trre10g02690 369 MobiDBLite consensus disorder prediction 322 341 - -
Trre10g02690 369 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Trre10g02690 369 MobiDBLite consensus disorder prediction 1 60 - -
Trre10g02690 369 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02690 Trre-Chr10 35035411 35037683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02690 48 182 MYB Transcription Factor Family AT1G69560 77.778 4.92e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g02690 Myb_DNA-bind_6 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02690 K09422 - gmx:100789305 378.637