Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02689 ATGCAAATGGTATATTCAGACCTTGGATCTCTCTCTCTTACTTCAAACTATGGTGTAGTTTCTTCAAGTTCAAATAAAGAGTTATTAAGTAAGAGTAGTTCTTCTTCTTTTACATTTATGAGAGAGTCCTTTCTTTCTAAAGGATTTGAAGAACAAAAAATGGATGATGATGATGATATTATGGAAGGAAAAGGTTCTTATTGTAGTGAAGATGGAGAAAATAGTGAGAGAACAAATCATCATCATAATATTAACTTCAATGATGAGTTAGAAAACCCTAATGGAAGTGGTAAAGAAGAAGGTAATGGGCAATCTAGTAAATGTGCAAGAGGACATTGGAGACCTGCTGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAGAATTGGAATCTCATAGCTGAAAATTTGGAAGGAAGATCTGGCAAGAGTTGTAGGCTAAGATGGTTCAACCAATTGGATCCAAGAATCAATAGAAGAGCATTCAATGAAGAAGAGGAAGAAAGACTAATGCAAGCACATAGAATTTATGGAAACAAATGGGCCATGATAGCAAGACTATTCCCAGGAAGAACAGACAATGCTGTAAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCCAATGCATATAGGAGAAGAAGATTAAGCCAAAATGTTTACAGAAGAATGGATCAAAATCCAAGCTTTATCTGCAGGGACACTACAACAATGGAAACAGAATCATCATCACCTTATTTTCTCAATGGAGCCCCACTTGGTAATAGTATGTCCATTTTCCCATATGCTACTTCTTTCCAATATGGTGTTCATGGTGGTGGGGTTGATTATGGTTTAAATGTTTTACCTCACATGAGTGGTGAGAGAGAACCTATTCAAGGACCCCTACATGTTGGTCTCTATGCTCAACAAGCACCATTTGATTTCTTCTCTGGTGGTAGAAATAATGGCATGGTAGTGAAAGAGTCTTTCAATCATAATAACAATTATTGGGATGGGACAAACAATGAATATCAACAACATCAACAACAATTATCTAGTTTCTACCATCATTATCCTCAACAACAATATCTTATGTCAATGCAACAACAAAACAATCACAATATTTACAATTTCTCAAATTCATCATCATCATCAACACATCATCATAATGCAGAAAACAGTGACAAAGTTGTGATTGGTGAGACCAAAGATGCTGTTCAAACTCCTCCTCAATTTTTTGACTTCCTTGGAATAGGTGCTACATGA 1269 0.357 MQMVYSDLGSLSLTSNYGVVSSSSNKELLSKSSSSSFTFMRESFLSKGFEEQKMDDDDDIMEGKGSYCSEDGENSERTNHHHNINFNDELENPNGSGKEEGNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFNEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSNAYRRRRLSQNVYRRMDQNPSFICRDTTTMETESSSPYFLNGAPLGNSMSIFPYATSFQYGVHGGGVDYGLNVLPHMSGEREPIQGPLHVGLYAQQAPFDFFSGGRNNGMVVKESFNHNNNYWDGTNNEYQQHQQQLSSFYHHYPQQQYLMSMQQQNNHNIYNFSNSSSSSTHHHNAENSDKVVIGETKDAVQTPPQFFDFLGIGAT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02689 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 156 IPR017930 -
Trre10g02689 422 MobiDBLite consensus disorder prediction 375 389 - -
Trre10g02689 422 MobiDBLite consensus disorder prediction 375 394 - -
Trre10g02689 422 PANTHER MYB PROTEIN-RELATED 110 370 - -
Trre10g02689 422 SMART sant 161 209 IPR001005 -
Trre10g02689 422 SMART sant 109 158 IPR001005 -
Trre10g02689 422 Gene3D - 163 233 - -
Trre10g02689 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 211 IPR017930 -
Trre10g02689 422 ProSiteProfiles Myb-like domain profile. 105 156 IPR001005 -
Trre10g02689 422 MobiDBLite consensus disorder prediction 88 103 - -
Trre10g02689 422 MobiDBLite consensus disorder prediction 69 87 - -
Trre10g02689 422 FunFam MYB transcription factor 163 234 - -
Trre10g02689 422 MobiDBLite consensus disorder prediction 69 112 - -
Trre10g02689 422 ProSiteProfiles Myb-like domain profile. 157 207 IPR001005 -
Trre10g02689 422 CDD SANT 113 154 IPR001005 -
Trre10g02689 422 Pfam Myb-like DNA-binding domain 113 173 - -
Trre10g02689 422 SUPERFAMILY Homeodomain-like 109 203 IPR009057 -
Trre10g02689 422 FunFam MYB transcription factor 110 161 - -
Trre10g02689 422 Gene3D - 110 161 - -
Trre10g02689 422 CDD SANT 164 204 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02689 Trre-Chr10 35035411 35037842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02689 1 235 MYB Transcription Factor Family AT1G69560 53.036 3.91e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g02689 Myb_DNA-bind_6 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02689 K09422 - gmx:100789305 389.037