Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02683 ATGAAGCTTTTTGGTAGAACCATTTTTCTAACACACAACCACATAGATGTCTCTTCCAATGATTCTTCCTTAGAATTTGCAACTCATCTTCCTTATGAAGATTTATCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTCCAACAGAACATGTTGCAAAGAGATACAAGGAAACATCAAGAAAAGAACTAACCTCAATGCAAGATGATGATGCTTCATTCCCAACCACAGAGGATTCAAAATCTCCCACATCCTCAAGCCTTATTGAGAACCCGAAAACTCCTTCATCTGAAACAGAAACTTCTGAACTGAACTCCACTAAAATTGATGAACAAAGTGTTATGTCACAAGACAAATCTCCAAACAAACCAGACATAATTGTTCCATGTCCAAGATGTAAAAGCATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCCCGACATTTCTGCAAAAACTGCCAGCGATATTGGACTGCTGGAGGAACCACGAGAAATTCTTCTATTATGTCTTCAACTTCACTTGAGAAGAAAATGAATGTTGGATCACATGAAGAAACATTTGATAAGAGTTCTCAAAGTTTATTTCCTCCACAGTTTCCATGGAACCCTACAATGTTTTATCCTGTGACATTGTATCCCAATATAGCATACTATGGTGGTTGTTTGCCACCATCTTGGAGTGTAAAATCTATCTCATCACAAACTTGTGCTCTAAGTAAACCAACTTTTGGAAAACACTCCAGAGATGGAGAAATTATCTTTCATTCCAACTCAGAAAATAACAAGATAGAAAGCAATAATAACAGTTTGTTGATCCCTAAGACACTAAGAGCAGGACTTTTCAAAGGGTTTGCAACTAAGGGTGATGAGAAGAATCATGTGGTTGAAGTATCCTCATCTGTATTGCAAGTTAACCCTGCAGCTTTATCAAGGTCTCTTGTCTTACATGAGAGGATTTGA 996 0.3705 MKLFGRTIFLTHNHIDVSSNDSSLEFATHLPYEDLSDHSLHSSLSSSSPLEVNSPTEHVAKRYKETSRKELTSMQDDDASFPTTEDSKSPTSSSLIENPKTPSSETETSELNSTKIDEQSVMSQDKSPNKPDIIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNSSIMSSTSLEKKMNVGSHEETFDKSSQSLFPPQFPWNPTMFYPVTLYPNIAYYGGCLPPSWSVKSISSQTCALSKPTFGKHSRDGEIIFHSNSENNKIESNNNSLLIPKTLRAGLFKGFATKGDEKNHVVEVSSSVLQVNPAALSRSLVLHERI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02683 331 Pfam Dof domain, zinc finger 134 184 IPR003851 GO:0003677|GO:0006355
Trre10g02683 331 PANTHER CYCLIC DOF FACTOR 2 194 330 IPR045174 GO:0003700|GO:0006355
Trre10g02683 331 MobiDBLite consensus disorder prediction 37 131 - -
Trre10g02683 331 MobiDBLite consensus disorder prediction 57 75 - -
Trre10g02683 331 ProSiteProfiles Zinc finger Dof-type profile. 135 189 IPR003851 GO:0003677|GO:0006355
Trre10g02683 331 ProSitePatterns Zinc finger Dof-type signature. 137 173 IPR003851 GO:0003677|GO:0006355
Trre10g02683 331 MobiDBLite consensus disorder prediction 38 54 - -
Trre10g02683 331 MobiDBLite consensus disorder prediction 76 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02683 Trre-Chr10 34958729 34960275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02683 103 331 C2C2-Dof Transcription Factor Family AT5G62430 34.228 8.44e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre10g02683 zf-Dof 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02683 - - psat:127119499 436.032