Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02678 ATGATGATTAATGATTCAACCATGAAGCTTTTTGGCAGAACCATTTTTCTAACACACAACCACATGGATGTCTCTTCCAATGATTCTTCCTCAGAATTTGCAACTCATATTCCTTATGAAGATTTATCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTCAAACTCAACATGATGCTAAGAGATATAAGGAAACATCAATGAAACAATTCACCTCAGTGCAAGTTGATGATGAGGTCTCACAACAAACCAAAGAGGATTTAAAATCTCCAACATCTTCAAGCCTTATTGAGAACCCGAAAACACCCTCGTCAGAAACCGAAACTTCTCAACTCAATTCCACTAAAATTGATGAACAAAGTGATATATCACAAGACAAATCTCCAAAGAAACCAGACCAAATTGTTCCATGTCCAAGATGCAAAAACATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCGCGACATTTCTGCAAAAACTGCCAGAGATATTGGACTGCTGGAGGAACCACGAGAAACATGCTTGTAGGCGCAGGTCGGCGCAAGAACAAATTATCTTCTTCATTTTCTTCCGATGTCTCTCATTGTCGTCAAATGAATACTGTCTTGACCTTTGGATCAGATTCTTCAACTTCACTTGACAAGAAAATGAATGTTGAATCACATGAAGAAAAAACTGATAATAGTCATCAAAATTTTCCTCCACAGTTTCCATGGAACCCTGCAATGTCTTATCCTGTGACATTCTATCCCAATATAGCATATTATGGTGGTTGTTTGGTACCATCTTGGAGTGTACAACCTATCTCACCACAATCTTGTGATCCAACTTTAGGGAAACATTCTAGAGATGGAAAGATTTTCTCTCATTCCAACTCAGAGAAAGAAAAACTTTGCTCAGAAAATAACAAGATAGAAAGTAATAATACTAGTGAGTTGATCCCTAAGACACTGAGACGAAAACTTTTCAAGGGATTTGCATCTAAGGGTGTTGAGAATAATCAAGTGGTTGAAGTATCATCATCAGTAATGAAAGCTAACCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATTTGA 1122 0.3725 MMINDSTMKLFGRTIFLTHNHMDVSSNDSSSEFATHIPYEDLSDHSLHSSLSSSSPLEVNSQTQHDAKRYKETSMKQFTSVQVDDEVSQQTKEDLKSPTSSSLIENPKTPSSETETSQLNSTKIDEQSDISQDKSPKKPDQIVPCPRCKNMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNMLVGAGRRKNKLSSSFSSDVSHCRQMNTVLTFGSDSSTSLDKKMNVESHEEKTDNSHQNFPPQFPWNPAMSYPVTFYPNIAYYGGCLVPSWSVQPISPQSCDPTLGKHSRDGKIFSHSNSEKEKLCSENNKIESNNTSELIPKTLRRKLFKGFASKGVENNQVVEVSSSVMKANPAALSRSLVFHERI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02678 373 Pfam Dof domain, zinc finger 140 196 IPR003851 GO:0003677|GO:0006355
Trre10g02678 373 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Trre10g02678 373 PANTHER CYCLIC DOF FACTOR 2 5 372 IPR045174 GO:0003700|GO:0006355
Trre10g02678 373 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Trre10g02678 373 MobiDBLite consensus disorder prediction 45 63 - -
Trre10g02678 373 MobiDBLite consensus disorder prediction 45 143 - -
Trre10g02678 373 MobiDBLite consensus disorder prediction 93 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02678 Trre-Chr10 34939770 34941693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02678 111 373 C2C2-Dof Transcription Factor Family AT5G62430 39.799 8.64e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre10g02678 zf-Dof 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02678 - - psat:127119499 519.62