Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02671 ATGAAGAATCAAAGTATGCATTTTGTTCTATCAACTGATTCAAAACCAAGACTCAGATGGACTACTGATCTTCACCAAAAATTCATTGATGCAATTAATCAACTTGGAGGTGCAGATAAAGCAACACCAAAGAGTATAATGAGGGTGATGGAAATTCCAGGACTTACCTTGTACCATCTAAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACAAGAAACCTGCTCTGACAACAAACAACAAGAAATCAAGACTAGTGATGATCATTGTAGCAGAGAAATCAGTCTTGGGGATCATAGTCAAATCACTGAAAACTTGGAGATAGCTCAAGCTCTAGAAATGCAAATGGAAGTAGAGAAGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGAAAGTATTTACAATCGGTACTAACGAAGGCGCAAGAAGTACTTTGTGGACACAATTCTTCTCCAATTGGTATAAAATACACAAAAGATGAACTCTCTCAATTGGTTACCATGGTCAACAATGCTTGTCCAAGTTCTCCATTCTCAGAACTAACCGAATCAAGAGGATTGAGTTCAAACTGTGGTAAGAGGAAACAGAACAATGGAACTATGTGTTCATTGGAAAGTTCTTTAACATCTTCAGAATCCTCAGAAAGAAAAGAAGACAAATATTCAATAGAAGAAATAGTAGAGTTCAAAAATTCCAATACTATTTCACTAATGGCCATGCACTCAGAAGATAAACCAGTGTCATGTCCGATATCTGTGTCTGTGACTCATAGTGATGATTCGTCTAATGAAGCTAATGGGAGAAAGAGAAATGAAGAAACTAAATTTGATACTAGTAGCTATGTTGAGGAATCTTCAAACAGGAAAAGATGTGGCAACAAGTTGAAGAAAGCTAAGTTGTCAGAAGAAATGTTGGACTTGAACAGACAATGTCAGAATGATATGGAATCAACAAGTTCAAAAACATTATTATTAGACTTAAATTGTAGTTTAAACTTTGGTGAACCATGA 1047 0.3582 MKNQSMHFVLSTDSKPRLRWTTDLHQKFIDAINQLGGADKATPKSIMRVMEIPGLTLYHLKSHLQKYRLGKSQQQETCSDNKQQEIKTSDDHCSREISLGDHSQITENLEIAQALEMQMEVEKKLYEQIEVQKHLQLRIEAQGKYLQSVLTKAQEVLCGHNSSPIGIKYTKDELSQLVTMVNNACPSSPFSELTESRGLSSNCGKRKQNNGTMCSLESSLTSSESSERKEDKYSIEEIVEFKNSNTISLMAMHSEDKPVSCPISVSVTHSDDSSNEANGRKRNEETKFDTSSYVEESSNRKRCGNKLKKAKLSEEMLDLNRQCQNDMESTSSKTLLLDLNCSLNFGEP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02671 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 288 IPR044848 GO:0003700
Trre10g02671 348 FunFam Myb family transcription factor 14 72 - -
Trre10g02671 348 MobiDBLite consensus disorder prediction 262 293 - -
Trre10g02671 348 Gene3D - 14 72 - -
Trre10g02671 348 NCBIfam myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677
Trre10g02671 348 Pfam Myb-like DNA-binding domain 18 68 IPR001005 -
Trre10g02671 348 MobiDBLite consensus disorder prediction 274 293 - -
Trre10g02671 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
Trre10g02671 348 Coils Coil 112 132 - -
Trre10g02671 348 Pfam MYB-CC type transfactor, LHEQLE motif 110 155 IPR025756 -
Trre10g02671 348 MobiDBLite consensus disorder prediction 213 232 - -
Trre10g02671 348 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02671 Trre-Chr10 34825404 34827278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02671 6 195 G2-like Transcription Factor Family AT1G69580 58.333 2.39e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre10g02671 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02671 - - tpra:123905031 522.702