Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g02669 | ATGGCTTCTGAAGCTGAAATTTCTGAAATTTCATCTTTGTTTGAAAGAATGATCAGGAACAGAGACAGAGACATGTCTCTGTTTTTACCCTTCATCCTTGGTCTTTCAGAATCTTCATCAATTTCAAGAAACGACAACGACCCAGATCAAGAATCAGAGAGTAACGATGATTCCAACCGTCAAAGAATAATCTTGGTGAATCCTTTAACACAGAGTATGGTTGTGATCGAAGGAGTTTCAAGTCTTGAAGCTTTGTTTAATCATCTTGGGAGTAACAAGAATGGTCAACCACCAGCTTCAAAGGAATCAATTGAAGCTATGAAGAAAGTTGAAATTGGAGAAGGTGATGATGATGGTGTTGAGTGTGTTGTTTGTTTGGAGGAATTTGAGGTTGGTGGAGTTGTTAAAGAGATGCCTTGTAAACATAGGTTTCATGGTGATTGTATTGAGAAGTGGTTAGGGCTTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTGTAGATGAGAAAGGTGATGGGAAGAAAAGTGATGAAGAAGAAAGTGGAGAGAGAAGAAGGGTTGGTGGTGGTAATGGTAATGGTGGTGGTGAAGTTTGGGTTAGTTTTTCTTTTAATAGGAGGAGTAGGGAAAATCAAGATCAAAATCAAAATCAAGCTACTTCTGGTGATGATGATGATGTTGAGGTGGAGAATTAA | 699 | 0.3891 | MASEAEISEISSLFERMIRNRDRDMSLFLPFILGLSESSSISRNDNDPDQESESNDDSNRQRIILVNPLTQSMVVIEGVSSLEALFNHLGSNKNGQPPASKESIEAMKKVEIGEGDDDGVECVVCLEEFEVGGVVKEMPCKHRFHGDCIEKWLGLHGSCPVCRYQMPVDEKGDGKKSDEEESGERRRVGGGNGNGGGEVWVSFSFNRRSRENQDQNQNQATSGDDDDVEVEN | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g02669 | 232 | MobiDBLite | consensus disorder prediction | 167 | 232 | - | - | |
| Trre10g02669 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 122 | 163 | IPR001841 | - | |
| Trre10g02669 | 232 | MobiDBLite | consensus disorder prediction | 205 | 223 | - | - | |
| Trre10g02669 | 232 | MobiDBLite | consensus disorder prediction | 168 | 187 | - | - | |
| Trre10g02669 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 169 | IPR013083 | - | |
| Trre10g02669 | 232 | Pfam | Ring finger domain | 121 | 163 | IPR001841 | - | |
| Trre10g02669 | 232 | SUPERFAMILY | RING/U-box | 113 | 168 | - | - | |
| Trre10g02669 | 232 | FunFam | E3 ubiquitin-protein ligase RNF181 | 87 | 169 | - | - | |
| Trre10g02669 | 232 | MobiDBLite | consensus disorder prediction | 44 | 58 | - | - | |
| Trre10g02669 | 232 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 46 | 167 | - | - | |
| Trre10g02669 | 232 | SMART | ring_2 | 122 | 162 | IPR001841 | - | |
| Trre10g02669 | 232 | MobiDBLite | consensus disorder prediction | 40 | 60 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g02669 | Trre-Chr10 | 34814635 | 34815333 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre10g02669 | 1 | 232 | C3H Transcription Factor Family | AT1G26800 | 49.590 | 1.07e-61 | 190 |