Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02650 ATGTTGAATGTTGATGTAATTGGTAACAAGAAAAGGAAAAGATGTGGGAGAGTTTTTAGGTTCAAGAATTTTGGTGAACAAGGGTACCCCGTTATGTTTAATGGAACATCATTTCGTGAGAATGTTAATGCTTTACTTGAATATGCAAATTTGGAGAGTAATTTAAATATGGGAATGGTAATGTGGTCTTTTCAACTTGAATTGCATCATCATCCACCTTTGCATATTTTGTTGTTTGTGATTGAAGAATCTATTGAGGCTGCTCTCAATCGTCATTGCAACCATTGTCAATACGTTGGGTGGGGCAATAATTTCATTTGCAATAAGAAGTATCATTTCCTATTACCCTCAAAGGAAGCACTAAATAGCTGCACAAGCTGTGAAAGTTGTTGTGATTCAATTGGTACAATGAAATTAATAGAATTAGAGGGACATATGATGCATGGTGTATTTCACTCTAATGGATTTGGACATTTGTTATGTGTTAATGGGTTGGAAACTGGTTCCAATTTAGGTGGAAATCAAATCATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCAAGGAAAGTAAGTTTGAATGACACATCACAAAAAAGAGGCATGGAATTGAGACTTGTGAATGGAATAGCATACAGTGAGCCATGGTTCGGTCATTGGGGATACAAATTTGGTCGAGGATGTTTTGGTGTAACACAATCAATGTACCAAAAAGCCATAGAAGCAATAAGAAGCATGCCACTATACCTACTCACACATCACATTGCAAATTTCAATCATGAAATCCCATTAATCTTCTCAAGATATCAAACACTTTCTGATCACTCTCTTATCACACTTGGTGATTTATTTCACTACATGTTAGAGCTCAAGTCGCGGCTTCCACGCGAAACATGCATTGGTTCCTACAACACAAGTGCTTTAGTCGAAACAAATTGTCGTTGGTCCCCTAAAAGGATCGAAATGGCAACTAGGGTCATTGTCGAGGCCTTAAAAAGAACGGAATTCAGGTGGATTTCAAGACAAGAAGTTAGAGATGCCGCACGCGCTTACATTGGCGACACTGGTTTGTTGGATTTTGTTTTGAAGTCGCTAGGAAACCACATTGTTGGAAACTACTTGGTTCGTCGAAGTTTGAATCCGGTTACCAAAGTTTTGGAGTATTGTTTAGAAGACATTTCTAATGTTTACCCTTGTCATGAAGGGTTGGTTATGAGTAGTAGTAATAAAGTTAAGGACAAGTACAAGATCACAAGGGGTCAACTCATGAAAGACATGATTTGTTTGTATAAATACATACTAATTGACACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCTTTGGCAGCTAGAATAATTCTTGACACTAAATATTTTATCAAAGACTATGGAGAGGTTCCTTTGCAAGTTGAATTAGGATCAGAAGGAAAATTCAATCTTTATTGTACAATTTTGTTAAGGAATGTTAACAATGTAGGACATGATCATGAGTATTATTTGAACAAGGATATGCCAATGCCACCTTATGAATGTATCACATTGAAAAGTTGTACTACAATTAATGACTTAAAGCTAGAAGTTGAAAGGAATTTTAGGGAAATCTATTGGGGGTTAAGGAATTTTGTAGTGGAATCCAATGGAAATTTAATGAACGCAAAAGGGAATGAAATGGTTTTTGGGATGTTTGAAGTTGGTAGGAAACTTGTACTTGAAGGTTGGCATGGTGGTGACATTGGAATCAATATGGTTGAGCAAATATGTGAAAGGGATCCAAATAAAGGCATTGTGGAGTGCATTTGTGGAACTAAAGAAGATGATGGTGAGAGAATGGTATCTTGTGATATTTGTGAAATTTGGCAACACACTAGGTGTGTAAGAATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGTAAAAGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAA 1974 0.3632 MLNVDVIGNKKRKRCGRVFRFKNFGEQGYPVMFNGTSFRENVNALLEYANLESNLNMGMVMWSFQLELHHHPPLHILLFVIEESIEAALNRHCNHCQYVGWGNNFICNKKYHFLLPSKEALNSCTSCESCCDSIGTMKLIELEGHMMHGVFHSNGFGHLLCVNGLETGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGHWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIANFNHEIPLIFSRYQTLSDHSLITLGDLFHYMLELKSRLPRETCIGSYNTSALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLVMSSSNKVKDKYKITRGQLMKDMICLYKYILIDTKPIIGSEFLSAIPLAARIILDTKYFIKDYGEVPLQVELGSEGKFNLYCTILLRNVNNVGHDHEYYLNKDMPMPPYECITLKSCTTINDLKLEVERNFREIYWGLRNFVVESNGNLMNAKGNEMVFGMFEVGRKLVLEGWHGGDIGINMVEQICERDPNKGIVECICGTKEDDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02650 657 SUPERFAMILY FYVE/PHD zinc finger 594 649 IPR011011 -
Trre10g02650 657 SMART PHD_3 601 647 IPR001965 -
Trre10g02650 657 ProSitePatterns Zinc finger PHD-type signature. 602 646 IPR019786 -
Trre10g02650 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 652 IPR013083 -
Trre10g02650 657 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 650 - -
Trre10g02650 657 ProSiteProfiles Zinc finger PHD-type profile. 599 649 IPR019787 -
Trre10g02650 657 Pfam PHD-finger 602 648 IPR019787 -
Trre10g02650 657 CDD PHD_MMD1_like 601 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02650 Trre-Chr10 34549246 34553667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02650 10 657 PHD Transcription Factor Family AT5G22260 51.180 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre10g02650 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02650 K26271 - gmx:100780210 1108.98