Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02642 ATGGTGCAGCGTCTCACCTATCGCAGGCGTCATAGCTACGCAACAAAATCCAATCAACACAGGGTTGTTAAAACCCCTGGTGGTAAGCTTGTTTATCAGACTACTAAGAAGAGAGCTAGTGGACCTAAGTGCCCTGTTACTGGCAAGAGAATTCAAGGAATTCCACACTTGAGGCCTACAGAGTACAAGAGATCAAGGTTGCCTAGAAACCGTAGGACTGTTAACCGTGCATATGGTGGAGTTTTGTCTGGAGGTGCTGTTAGGGAAAGGATCATTAGGGCTTTCTTGGTTGAAGAGCAAAAGATAGTGAAGAAGGTCCTCAAAATTCAGAAGGCAAAGGAAAAGCAGGCCACTAAGGCATGA 363 0.4573 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQATKA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02642 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Trre10g02642 120 Gene3D - 39 120 - -
Trre10g02642 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre10g02642 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 116 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre10g02642 120 Gene3D - 1 37 - -
Trre10g02642 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre10g02642 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre10g02642 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre10g02642 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02642 Trre-Chr10 34411617 34413174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02642 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 92.437 4.36e-76 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02642 K02915 - gmx:100785061 214.542