Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02631 ATGCAAAAAGAAGCACAAGAAAATTCTCATCAAAATTCATCGGTGCATAAAATGGTTCATGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTCAATCGTACACTTGAAGGCTTAAACAATTCAAACAAAACATGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGATTTCAATTTCATAGTGCAAACCAATGTCATTGAGATGATAAGAAACATCTTAGCCATCAATATGTATTTCATGAAGCACAACAAAGAAACAAACGAACGGTTGTTTCCAAGTTGGTTTTCTAGGCATGAGAAGAATCTTTTACAGACTAACTCTCCAATAAAGTTCAATCTTGTGGTTGCAAAAGATGGTTCTGGACATTATAAAACTGTGCAAGCTGCTCTGGATGCTGCTTCTAAGAGAAAATTTAAGACAAGATTTGTGATACATGTGAAGAAAGGTGTTTATAAAGAGAATATTGAGGTTGCTGTTCATAATGATAATATTATGTTAGTTGGTGAGGGGATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGCTCTGCAACAGCAGGTATTGACGGACTTCACTTCATTGCACGTGACATCACCTTCCAAAATACTGCCGGTCCACACAAGGGCCAAGCCGTAGCACTTCGATCGGCCTCTGATCTCTCAGTATTCTACCGTTGTGCCATATCAGGTTATCAAGATACCCTAATGACTCATGCACAACGTCAGTTTTACCGACAATGCTACATCTATGGCACCGTAGACTTCATCTTTGGCAATGCTGCAGTAGTATTCCAAAATTGTAACATTTTTGCAAGAAAGCCTTTAGATGGTCAAGCTAACATGATCACTGCCCAAGGTCGAGGTGACCCATTCCAAAACACTGGAATTTCATTCCACAATTGTCAAATTAGGGCTGCATCTGATTTAAAGCCCGTCGTCGACAAGTACAATACCTTCTTGGGCCGGCCTTGGCAACAATACTCCAGAGTTATGGTAATGAAAACTTTTATGGACACTTTAGTGAGCCCATTGGGTTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGACACATTGTATTATGCTGAGTATGAAAATTATGGGCCTGGCTCATCAACAAAAGAGAGAGTGAAATGGCCTGGTTATCATGTGATAACAAATCCAAATGAAGCCTCAAAGTTTACTGTTACTGGACTCCTTGCTGGCCCAAGATGGTTGGCTACAACTACTGTACCATTTACATCTGGTCTTTGA 1344 0.3929 MQKEAQENSHQNSSVHKMVHGDCLKLFENTIFHLNRTLEGLNNSNKTCSPHDAQTWLTTSLTNIETCKSGALELNAQDFNFIVQTNVIEMIRNILAINMYFMKHNKETNERLFPSWFSRHEKNLLQTNSPIKFNLVVAKDGSGHYKTVQAALDAASKRKFKTRFVIHVKKGVYKENIEVAVHNDNIMLVGEGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIRAASDLKPVVDKYNTFLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYAEYENYGPGSSTKERVKWPGYHVITNPNEASKFTVTGLLAGPRWLATTTVPFTSGL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02631 447 Pfam Plant invertase/pectin methylesterase inhibitor 12 97 IPR006501 GO:0004857
Trre10g02631 447 ProSitePatterns Pectinesterase signature 2. 279 288 IPR033131 -
Trre10g02631 447 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 101 IPR035513 -
Trre10g02631 447 PANTHER PECTINESTERASE 9 437 - -
Trre10g02631 447 SUPERFAMILY Pectin lyase-like 130 446 IPR011050 -
Trre10g02631 447 Pfam Pectinesterase 134 432 IPR000070 GO:0030599|GO:0042545
Trre10g02631 447 CDD PMEI-like_3 8 103 - -
Trre10g02631 447 FunFam Pectinesterase 128 447 - -
Trre10g02631 447 Gene3D - 128 447 IPR012334 -
Trre10g02631 447 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 10 98 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02631 Trre-Chr10 33980658 33982652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02631 8 447 Carbohydrate Esterase AT5G51490 58.499 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02631 K01051 - gmx:100806133 707.597