Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02629 ATGGAAGAGAGAAATGATGGTGAAAAACTTGATGAAGTTATTTTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGTTTTTACCTAAAGAGAAAGGTTCAACAAAGGCCTCTTTCTATTGAACTCATCAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAGTTTGCTAGTACAGGAGAGAAAGAATGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACAGGGACAGATAGACCTATCTATTCCTCAGAAGGTTCAAAGTGTATTGGCCTTAAGAAATCATTAGTCTTTTACAAAGGAAGAGCTGCTAAAGGAATCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCACTGATCCACTTTCACCAAAGAAGTACTTGGAGAAAACCATTCCAGCTAATGAATCATGGGCTATCTGCAGAATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTTTGTCTCAATCTTGGGTTTCTTCACTTTCTGAAACAAGAACCTCTAACATGCTAACAAAAAATCAAGAAATAACTCAATTTTGTTCTGACAATAACATGTCATTGACAAAGAAAACTACCTTAGCCAACAACTTTTGCACTAACAACAATGATAACCAAAATTTTGATTTTGATGTTACCCCTTATAAATCCAATATTAATCCATTACTACACAAAGCCTTTGATCACTTACCTATTTCAAATGAAGATCTTAATGCAAGCTTAATATTCTCACCATCTCAACTACAAACATCTAATAACACCAATTTTATTGCCAAATCTACAATGGATGTTTCATCAATGTTGTTGAATATGTCATCATCCTCAATGTTTGGTGATGAGGTTACAACTACAAATTTGATGAATGGTGGGTTACAAGAGCAATTTAGTGACTACTCATTACCATATGGTAACCAATATGAAAATAATAATAATGCATTGGTAAAGGTACCTTATAATGTGAATGTGCCTCGTATTGATCATGAGCAAGAATTGATGCATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTTGTGATGTCCCCTCTAGTTATTATTCTACAACAACCAAGTGTTACACTTAA 1188 0.3502 MEERNDGEKLDEVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTDPLSPKKYLEKTIPANESWAICRIFKKTNSTAQRALSQSWVSSLSETRTSNMLTKNQEITQFCSDNNMSLTKKTTLANNFCTNNNDNQNFDFDVTPYKSNINPLLHKAFDHLPISNEDLNASLIFSPSQLQTSNNTNFIAKSTMDVSSMLLNMSSSSMFGDEVTTTNLMNGGLQEQFSDYSLPYGNQYENNNNALVKVPYNVNVPRIDHEQELMHFNIGDAWKSNLLWDTSFCPCDVPSSYYSTTTKCYT 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02629 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 239 - -
Trre10g02629 395 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Trre10g02629 395 FunFam NAC domain-containing protein 35 23 175 - -
Trre10g02629 395 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Trre10g02629 395 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Trre10g02629 395 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02629 Trre-Chr10 33977021 33979737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02629 2 321 NAC Transcription Factor Family AT1G26870 55.490 4.01e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g02629 NAM 4.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02629 - - gmx:100783995 501.516