Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02609 ATGGAATTGGAAGGTGATCATCAAAATAATGGAATCCGAAGCAGACCCAATTTCCCTCTTCAGCTTTTAGAAAAAAAAGACAACAACATCCTAGATGTCTCCGAAGAACAACAACCTTGTTCAACTACCGCAAACGACGGCTCAGGCACCATCGTCACATCAGACAACCAGAAAAAGCCAGCGCCGAAGCGGGCTTCGACAAAAGACCGGCACACGAAAGTGGACGGACGAGGCCGCCGGATCCGCATGCCGGCGGCCTGTGCAGCCAGAGTGTTCCAGCTCACACGTGAGCTGGGACATAAATCCGATGGTGAGACGATCGAGTGGCTACTTCAACAGGCAGAGCCAGCCGTCATCGCCGCCACCGGTACAGGGACAATTCCGGCAAACTTCACTTCTCTTAACATCTCTCTTAGAAGCTCAGGTTCAACCATGTCAGCGCCATCACACTATTTTAGAGGTAACTACTTCAACCCTAGCTCGTTCTCAACCGCTGCAGCCGCGGCGGCTCAGCTTAGAAACCGAGCTGAATGGGACAGAACAATGAACATGAACGTTACAGCTGATGATTCTAGAAGGAATAACAATATGATGGAGAATCCTTCATCTTTATCAGCAATTTTGAATTTTAACAACGTGCAAAATGCTATTCTACAAGCAAAACAAGAGCTCCGGGAAGAAAACGCCACCTCCGGCGGCGGAGGTGGTGGAGGATTTGAATTATTGGGTTCTGATTCAGATGGAAGCATAGGAAGGAAAAGAAGATCAGAGCAAGAATTGTTATCACAAAATATGGGAAGTTATTTGTTACAATCAAATGTGGGGTCACTTCCTTCAAGTCATGCTTCCAATACGGCAGCGTTTTGGATGGTAACAGGTAATGGTAACCAAGGTGTTAATGGTGGTAGTAATGGAAATGATCCAATTTGGGCAATTCCTTCTGTTGGGAATAATGGTTTGTATAGAGCAGCTATGCCTTCTAATGGAATTCATTTCATGAATTTTGCTTCTCCAGTGAATCTTATGCCCGGAAGTCAATTAGGTTCTGGAATTGTCGGCAGCGGTGGAGGCGGCGGTGGTATTATGGCCGAAAGTAATTTAAGTATGCTTTCGGCCATGAATGCATATAGGCAGATTCAGACGAATGGCATGTCTGAGTCTACCGGGCAACATCATGGAGGAGGAGATGATGGACATGATTCAAGCAGTCAACAATCCTAA 1221 0.4636 MELEGDHQNNGIRSRPNFPLQLLEKKDNNILDVSEEQQPCSTTANDGSGTIVTSDNQKKPAPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSSFSTAAAAAAQLRNRAEWDRTMNMNVTADDSRRNNNMMENPSSLSAILNFNNVQNAILQAKQELREENATSGGGGGGGFELLGSDSDGSIGRKRRSEQELLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGNGNQGVNGGSNGNDPIWAIPSVGNNGLYRAAMPSNGIHFMNFASPVNLMPGSQLGSGIVGSGGGGGGIMAESNLSMLSAMNAYRQIQTNGMSESTGQHHGGGDDGHDSSSQQS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02609 406 MobiDBLite consensus disorder prediction 384 406 - -
Trre10g02609 406 MobiDBLite consensus disorder prediction 1 20 - -
Trre10g02609 406 MobiDBLite consensus disorder prediction 33 79 - -
Trre10g02609 406 Coils Coil 210 230 - -
Trre10g02609 406 MobiDBLite consensus disorder prediction 61 79 - -
Trre10g02609 406 Pfam TCP family transcription factor 66 216 IPR017887 -
Trre10g02609 406 MobiDBLite consensus disorder prediction 225 251 - -
Trre10g02609 406 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 404 IPR005333 GO:0003700
Trre10g02609 406 MobiDBLite consensus disorder prediction 33 60 - -
Trre10g02609 406 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02609 Trre-Chr10 33651877 33653097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02609 259 398 TCP Transcription Factor Family AT1G69690 35.570 1.95e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre10g02609 TCP 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02609 - - vum:124821453 479.944