Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02584 ATGCATGAGATGGCTTTCTTCCAAGCAAATTTTATGTTACAAACTCCTCATCACCATGATGAACATCATCATCATCATCCACCACCTTCACTCAACTCAATTCTACCTCAAGATTATCATGGGGGACCATCATTTCTAGGAAAGAGATCTATGTCATTTTCATCAGGAATTGAGCTTGGAGAAGAAGCCAATATTGCTGAAGAAGATTTATCTGATGATGGATCACAAGCTGGTGAGAAAAAGAGGAGACTTAACATGGAACAAGTGAAGACACTTGAGAAAAGTTTTGAGCTTGGTAATAAGCTTGAACCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTAAATTTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAACAGGAGAGCAAGATGGAAGACAAAGCAGTTAGAAAAAGACTATGATGTCCTTAAAAGACAATATGATGCTGTTAAGTTAGATAATGATGCACTTCAAGCTCAAAACCAAAAACTTCAAGCACAGATATTGGCATTGAAAAATAGAGAACCAACAGAATCAATCAATCTAAACAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAAAATAGTTCAGATATCAAGTTAGATATCTCAAGAACACCAGCTAGTGATAGTCCATTATCAACACACCATCATACAACAAGCAGAACTTTCTTTCCACCTTCTTCAAGGCCATCAGGTGGAATTGCTCAACTTTTTCAAACTACTTCAAGGCCAGAAATTCAATGTCAAAAGATTGATCAATTGGTCAAAGAAGAAAGTTTAAGCAACATGTTTTGTGGTATGGATGATCAAGCTGGATTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA 861 0.3717 MHEMAFFQANFMLQTPHHHDEHHHHHPPPSLNSILPQDYHGGPSFLGKRSMSFSSGIELGEEANIAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKLDNDALQAQNQKLQAQILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISRTPASDSPLSTHHHTTSRTFFPPSSRPSGGIAQLFQTTSRPEIQCQKIDQLVKEESLSNMFCGMDDQAGFWPWLEQQHFN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02584 286 SUPERFAMILY Homeodomain-like 73 137 IPR009057 -
Trre10g02584 286 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Trre10g02584 286 CDD homeodomain 80 136 IPR001356 GO:0003677
Trre10g02584 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 252 IPR045224 GO:0003700
Trre10g02584 286 Gene3D - 72 141 - -
Trre10g02584 286 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Trre10g02584 286 MobiDBLite consensus disorder prediction 64 86 - -
Trre10g02584 286 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Trre10g02584 286 MobiDBLite consensus disorder prediction 180 238 - -
Trre10g02584 286 MobiDBLite consensus disorder prediction 17 39 - -
Trre10g02584 286 FunFam Homeobox-leucine zipper protein ATHB-13 72 139 - -
Trre10g02584 286 Coils Coil 127 175 - -
Trre10g02584 286 SMART HOX_1 78 139 IPR001356 GO:0003677
Trre10g02584 286 Pfam Homeobox associated leucine zipper 135 175 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02584 Trre-Chr10 33274014 33276021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02584 4 286 Homeobox Transcription Factor Family AT1G69780 63.636 4.98e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre10g02584 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02584 K09338 - gmx:100808033 435.261