Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02583 ATGCAAGATATGAAGAAGCAACATAATCAGAATCAGAAGAAGAAGCAGCTTCTTAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAAGATGATATACTTAGAGACCAAATTGGAATTCATGGAACTGAAAATTGGGCTATAATTGCTTCTAAATTCAAGGACAAAACTACAAGACAGTGTAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAAGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGCAATAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACTTTGTGCAAAAAGAGAGCTAAATATGAAGCCTTAGCAAAAGAGAACAACGTTTCATACACGAATTCAAATAACAAAAGGATTATTTTCCGAGATGCGGAATCAGAATCTGCAGTAGATTTTAAGAAGTTGAGGAGGTCTCATATCCCTGATGATGCAGAAAAGATCAACTTTGCAGACAGATCACATAAACAAAATGAAACTTCAAGAGTACCATTGGCAGTTTTAGCTCAAAACTCTCATAGTGTCAACAACTTGCCGGATCAGAATCATGTTTGCAATGTGAAGTATAATGGTTATGCTCAAACCAACAAGATTCAAGGAACATTCCTTAAAAAGGATGATCCAAAGATAACCGCATTGATGCAACAAGCCGAGCTACTAACTTCACTAGCTCTAAAAGTTGATGCAGAGAATATGGACCAAAGTCTTGAAAATGCATGGAAGATTCTTCAAGAGTTTATGAACCGAAACAAAGAATCGGATATTCCTGGATATAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGACTTATTGGAAGACTTAAAGAATAGTAATGAGGAAATCCAGCCATGTTGGAGGTATATGGAATTATATGAAGACTCTCCAAGCAGTTCTGAACACAGTACAGGATCAACTATTCTTCCTCATTCTGCTGCTGAGAATTTGGAACACTCACTGCATCAAAATAATGGAACTGAACAGAAATCTATACAAATTGAAGATCAAAAGGGTGTTGGAGGATGTGATCAAGTGGTTCTTTCTAGTGTTACTTTGGATCAAGAAGATATATTCTCATCTTGCGAGGAACCGATAAACAATGTCGGCATTGTTGCTTCCTTATCAAGTACAGAGTTCAGTTCCCCTCTTCAAGTTACTCCTATGTTCAGATCCTTAGCTGCAGGAATTCCTAGTCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACCCTTGGAATGGATTCTCCACCCCTCAATCCAATCGCCAACCCCTCGCAACCGCCACTCTGCAAAAGAGCCCTCTTACAAAGTTAA 1413 0.3829 MQDMKKQHNQNQKKKQLLNEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNVSYTNSNNKRIIFRDAESESAVDFKKLRRSHIPDDAEKINFADRSHKQNETSRVPLAVLAQNSHSVNNLPDQNHVCNVKYNGYAQTNKIQGTFLKKDDPKITALMQQAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDIPGYKIPDLQLVDLKDLLEDLKNSNEEIQPCWRYMELYEDSPSSSEHSTGSTILPHSAAENLEHSLHQNNGTEQKSIQIEDQKGVGGCDQVVLSSVTLDQEDIFSSCEEPINNVGIVASLSSTEFSSPLQVTPMFRSLAAGIPSPQFSESERNFLMKTLGMDSPPLNPIANPSQPPLCKRALLQS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02583 470 SMART sant 28 77 IPR001005 -
Trre10g02583 470 SMART sant 80 128 IPR001005 -
Trre10g02583 470 ProSiteProfiles Myb-like domain profile. 32 75 IPR001005 -
Trre10g02583 470 MobiDBLite consensus disorder prediction 1 22 - -
Trre10g02583 470 Coils Coil 1 24 - -
Trre10g02583 470 Gene3D - 19 80 - -
Trre10g02583 470 CDD SANT 84 125 IPR001005 -
Trre10g02583 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 79 IPR017930 -
Trre10g02583 470 PANTHER MYB PROTEIN-RELATED 31 193 - -
Trre10g02583 470 FunFam Transcription factor MYB124 24 80 - -
Trre10g02583 470 Pfam Myb-like DNA-binding domain 32 92 - -
Trre10g02583 470 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Trre10g02583 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Trre10g02583 470 CDD SANT 31 75 IPR001005 -
Trre10g02583 470 Gene3D - 82 154 - -
Trre10g02583 470 SUPERFAMILY Homeodomain-like 28 122 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02583 Trre-Chr10 33232862 33237227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02583 1 319 MYB Transcription Factor Family AT2G02820 61.905 6.19e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g02583 Myb_DNA-bind_6 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02583 K09422 - gmx:100807667 731.095