Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02567 ATGTCTGAGAGAATTTTCCTTCGAAATGCTGAAGACACCAACCTCAAGAACAAAATGGAGGAGGTGTCAAAGTTGATACCTAAGAAGGAACCGGTGGCAATACCACAAACCACTAAATCTAATGATGAGAATTTGCTTACTTCGAGGCCTGGCATTCAGTCCAAGTCCATTTCCAAACCATTGGAGATTGGTGAACAAAGTTCATCCCATAATGTTATAGGAGAACCTTTATCTCAAAACACTATAGGTGAACCTTTACCTCAGCAAGAAGTGAGGGAATTCCGTTGTCGTTTCTGTTACGACACATTCTCCACTTCTCAAGCACTTGGAGGACATCAAAACGCCCATAAGCTTGAGCGTTCCATCATAAAAATGGAACGACAAAGAAAAGAAGATCAAATAAATGCAATCCTATGGTCTAGGTATAATAATCGACCATACCATTATGCATTTCCATGCCCTATACATAATGCTAACTTGCACCACCCAATTAGCGCTCCTATGAACAATACTTGGGCTATTGGTTCTCCTTCTAGTGGCTATGGAGGGTTGTATATGTCAAATACACCCGAAATATCACCCCGATTTGTGATGCAAATGCCAAATGCATCCCTCATAACACCGCAACTTGGAATGACTAATTATTGTGGTGGAAATCAAAATTTTGCATTTCCAATTCAACAACGACCAGACACTTTAAGTTTGGGACATTTGGCTCAAGCAAATCAAACGCCTTCAATTGTTGAAGGTGCTGAAAGAAATTGCAATTCTCAAAATGAGTTTCAAACTCTTCCTTTGCTGTCTCGTGATCTTACTGGAGAAGGATCAGGTCAAGCCAATGTGTCCTCGTCATCAATACAATCAACCTCAGAGGAAATTAACTTGGATCTCACTCTTTAA 900 0.4022 MSERIFLRNAEDTNLKNKMEEVSKLIPKKEPVAIPQTTKSNDENLLTSRPGIQSKSISKPLEIGEQSSSHNVIGEPLSQNTIGEPLPQQEVREFRCRFCYDTFSTSQALGGHQNAHKLERSIIKMERQRKEDQINAILWSRYNNRPYHYAFPCPIHNANLHHPISAPMNNTWAIGSPSSGYGGLYMSNTPEISPRFVMQMPNASLITPQLGMTNYCGGNQNFAFPIQQRPDTLSLGHLAQANQTPSIVEGAERNCNSQNEFQTLPLLSRDLTGEGSGQANVSSSSIQSTSEEINLDLTL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02567 299 Coils Coil 115 135 - -
Trre10g02567 299 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Trre10g02567 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Trre10g02567 299 SUPERFAMILY beta-beta-alpha zinc fingers 92 121 IPR036236 -
Trre10g02567 299 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 70 248 IPR044246 GO:0009788
Trre10g02567 299 MobiDBLite consensus disorder prediction 34 55 - -
Trre10g02567 299 MobiDBLite consensus disorder prediction 33 55 - -
Trre10g02567 299 Gene3D Classic Zinc Finger 78 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02567 Trre-Chr10 32881736 32882635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02567 88 146 C2H2 Transcription Factor Family AT5G01860 54.237 3.61e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02567 - - tpra:123892015 310.842