Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02558 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGATCAAGAACTTACTCTATGGGAAGAAATCATCGTCTAACTCGAAGTCTAGTTCATCGAAGAAGAATGACATTTTCAAATCGTCGAGTAACAAGGATCCGTTGGGATCTTCTGAGTTAACTGTGTCAAATCCAATTCCAACTATGGATTCTTTGATGATATCCGCGCCGATTTCTGGATTTAATGCTGCTAAAGGAGTGGTTTCAGAAAAGGAAGTAATTAACGGGCCATCTCGTGAGCGGGAGATTCTCTCAAATGGAGACGGAGAGGGTCGTGCAGAAGCTGTTGCTAATTTTGCATCTCAAGATGATCGTGAGACAGTCAGGCTTACAGAAGCAGCTATTAAACTTCAGTCTGCTTGCAGAGGCTATCAGGCTCGTCGGGAATTTCAAACATTCAAAAGTATCACACAGCTGCAAGCTCTTATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATATTGTGTGAAGAAAATTGTTAAGTTCCAAGCATTGGCTCGTGGTTACAATGTTAGGCGTTCTGATATTGGGCTTGAGGTCCTGAAAATTCGTAAGGATACTCAACTTTCAAAACCTATTGGAGTAGTTACATCTAGAGAGGCAGAGAAGCTGTCAGAAAATGTCTTTGTTCGCAAGCTACTGGCTTCATCGCCCCATGCTTTTCCTCTATCTTTCAATACTGATCTTGGAGAACCTTACTTGGCTTGGAAGTGGCTTGACCGATGGACAAGGTCACACTTTTGGGCATCTCTTCCTAAATTGAAGAAATTTGACTCGGTGTCTGATGAAAAAAATATCAGTTGTCAAACAGTTGAAAAGGGACAAGTTAAAAGGAATACCCGGAAGTCTCCTGCCGTGAAAGCTGATGATAGCTCAAGTTCAGGTTCTAACAAATATAAACAGCGTCCCAAAAAGGATTTAAATCACTCATTGGTTTCAGCTCAGGAACATCCAAAGAAAGAAATTGAGAAAAGTAGTCTAAAAAAAACTCGCATGCAGAATGTTTCGGACAGATCTGAGGCAGTTAATGAGAAAAGAAAACAAAGCTCTAGGACAACTACAGATCATAATGTTACAGATGTCGCAGAGCGGGGGCCAAATTCCTCTTCAGAGAAAATGAAAGATACGATGGTGCCAAAGTCAGAAGAGTCTTATCCTGAGAAAGTTCTTGGACAGAAAACACCAGAAGAGAATAATGATAAGCCAAAGAAGAGCGTAAATGGTGGTGCCAAAGAAGAGAAAGGTCTTGGACAGAAAACACTAGAAGAGAATAACAATAAGCCAAAGAAGAGCTTTAATGGCAGTGCCAAAGAAGAGAAAGGTCTTGGACAGAAAGCACTCGAAGAGAATAGTGATAAGCCAAAGAAGAGTTTAAATGGCAGTGCCAAAGAAAATAATGGTCTTGGACAGAAAGCACTAGAAGAGAATAATGATAGGCCAAAGAAGAGCTTAAATGGCGGTGCCAAAGAAGGGAATGGTCTTGAACAGAAAGCTCTAGAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAGTGGCGGTGCCAAAGAAGAGAAAAGTCTTGGAAAGAAAGCACCAGAAGAGAAAGGCCATAATGATCCCACTGCTGTCTTACAGACTAGTGTGAAGAATGTAGATGAAAAAATTGGAGTTAGCGAAGACTTAAATGGCGGTGACAAAATAATCAGCAACAATTACCAAAGAAGAGCTTCACTACCTGCTAATTTTAATGATCAAGAAAATGAGTTACATAACACTCCAAGATTGCCGAGTTATATGGCTCCTACTGAATCAGCAAAAGCTAGGCTAAGGGGACAAGGCTCCCCAAGATTTGCTACTGATATCTTAGACAAAAACAGTTTAACCAGGAGGCATTCACTTTCATCTTCTATTAACAGCAAGTCAGGTTCTTTTTCCCCAAGAGCAGAAAAGCTGTTAACCTTGAGCGGAAGAGGAGTTGCGAGGACTGATAAATCTCTGTCATCTTCAAGGGACAAATCTCTGTCATCTTCAAGGGATGGGACTGATAAGATGACACAACCTCAGTGGAGAAGGTGA 2091 0.4113 MGKGRSPGKWIKNLLYGKKSSSNSKSSSSKKNDIFKSSSNKDPLGSSELTVSNPIPTMDSLMISAPISGFNAAKGVVSEKEVINGPSREREILSNGDGEGRAEAVANFASQDDRETVRLTEAAIKLQSACRGYQARREFQTFKSITQLQALIRGHLVRRQAVSALYCVKKIVKFQALARGYNVRRSDIGLEVLKIRKDTQLSKPIGVVTSREAEKLSENVFVRKLLASSPHAFPLSFNTDLGEPYLAWKWLDRWTRSHFWASLPKLKKFDSVSDEKNISCQTVEKGQVKRNTRKSPAVKADDSSSSGSNKYKQRPKKDLNHSLVSAQEHPKKEIEKSSLKKTRMQNVSDRSEAVNEKRKQSSRTTTDHNVTDVAERGPNSSSEKMKDTMVPKSEESYPEKVLGQKTPEENNDKPKKSVNGGAKEEKGLGQKTLEENNNKPKKSFNGSAKEEKGLGQKALEENSDKPKKSLNGSAKENNGLGQKALEENNDRPKKSLNGGAKEGNGLEQKALEENNDKPKKSLSGGAKEEKSLGKKAPEEKGHNDPTAVLQTSVKNVDEKIGVSEDLNGGDKIISNNYQRRASLPANFNDQENELHNTPRLPSYMAPTESAKARLRGQGSPRFATDILDKNSLTRRHSLSSSINSKSGSFSPRAEKLLTLSGRGVARTDKSLSSSRDKSLSSSRDGTDKMTQPQWRR 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02558 696 MobiDBLite consensus disorder prediction 674 696 - -
Trre10g02558 696 Pfam IQ calmodulin-binding motif 143 160 IPR000048 GO:0005515
Trre10g02558 696 Pfam IQ calmodulin-binding motif 120 140 IPR000048 GO:0005515
Trre10g02558 696 Pfam IQ calmodulin-binding motif 169 185 IPR000048 GO:0005515
Trre10g02558 696 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
Trre10g02558 696 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
Trre10g02558 696 MobiDBLite consensus disorder prediction 283 571 - -
Trre10g02558 696 MobiDBLite consensus disorder prediction 379 471 - -
Trre10g02558 696 MobiDBLite consensus disorder prediction 16 51 - -
Trre10g02558 696 MobiDBLite consensus disorder prediction 633 653 - -
Trre10g02558 696 MobiDBLite consensus disorder prediction 1 51 - -
Trre10g02558 696 Gene3D - 113 165 - -
Trre10g02558 696 PANTHER IQ-DOMAIN 5-RELATED 1 644 - -
Trre10g02558 696 MobiDBLite consensus disorder prediction 506 542 - -
Trre10g02558 696 MobiDBLite consensus disorder prediction 589 696 - -
Trre10g02558 696 Pfam Protein of unknown function (DUF4005) 590 661 IPR025064 -
Trre10g02558 696 MobiDBLite consensus disorder prediction 311 365 - -
Trre10g02558 696 SMART iq_5 166 188 IPR000048 GO:0005515
Trre10g02558 696 SMART iq_5 143 162 IPR000048 GO:0005515
Trre10g02558 696 SMART iq_5 118 140 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02558 Trre-Chr10 32704820 32710408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02558 578 696 IQD Protein Family AT1G14380 46.721 8.37e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02558 - - tpra:123907401 982.245