Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02557 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGATCAAGAACTTACTCTATGGGAAGAAATCATCGTCTAACTCGAAGTCTAGTTCATCGAAGAAGAATGACATTTTCAAATCGTCGAGTAACAAGGATCCGTTGGGATCTTCTGAGTTAACTGTGTCAAATCCAATTCCAACTATGGATTCTTTGATGATATCCGCGCCGATTTCTGGATTTAATGCTGCTAAAGGAGTGGTTTCAGAAAAGGAAGTAATTAACGGGCCATCTCGTGAGCGGGAGATTCTCTCAAATGGAGACGGAGAGGGTCGTGCAGAAGCTGTTGCTAATTTTGCATCTCAAGATGATCGTGAGACAGTCAGGCTTACAGAAGCAGCTATTAAACTTCAGTCTGCTTGCAGAGGCTATCAGGCTCGTCGGGAATTTCAAACATTCAAAAGTATCACACAGCTGCAAGCTCTTATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATATTGTGTGAAGAAAATTGTTAAGTTCCAAGCATTGGCTCGTGGTTACAATGTTAGGCGTTCTGATATTGGGCTTGAGGTCCTGAAAATTCGTAAGGATACTCAACTTTCAAAACCTATTGGAGTAGTTACATCTAGAGAGGCAGAGAAGCTGTCAGAAAATGTCTTTGTTCGCAAGCTACTGGCTTCATCGCCCCATGCTTTTCCTCTATCTTTCAATACTGATCTTGGAGAACCTTACTTGGCTTGGAAGTGGCTTGACCGATGGACAAGGTCACACTTTTGGGCATCTCTTCCTAAATTGAAGAAATTTGACTCGGTGTCTGATGAAAAAAATATCAGTTGTCAAACAGTTGAAAAGGGACAAGTTAAAAGGAATACCCGGAAGTCTCCTGCCGTGAAAGCTGATGATAGCTCAAGTTCAGGTTCTAACAAATATAAACAGCGTCCCAAAAAGGATTTAAATCACTCATTGGTTTCAGCTCAGGAACATCCAAAGAAAGAAATTGAGAAAAGTAGTCTAAAAAAAACTCGCATGCAGAATGTTTCGGACAGATCTGAGGCAGTTAATGAGAAAAGAAAACAAAGCTCTAGGACAACTACAGATCATAATGTTACAGATGTCGCAGAGCGGGGGCCAAATTCCTCTTCAGAGAAAATGAAAGATACGATGGTGCCAAAGTCAGAAGAGTCTTATCCTGAGAAAGTTCTTGGACAGAAAACACCAGAAGAGAATAATGATAAGCCAAAGAAGAGCGTAAATGGTGGTGCCAAAGAAGAGAAAGGTCTTGGACAGAAAACACTAGAAGAGAATAACAATAAGCCAAAGAAGAGCTTTAATGGCAGTGCCAAAGGTCTTGGACAAAAAGCACTAGAAGAGAATAATGATAAGCCAAAGAAGAGTTTAAATGGGAGTGCCAAAGAAGAGAAAGGTCTTGGACAGAAAGCACTCGAAGAGAATAGTGATAAGCCAAAGAAGAGTTTAAATGGCAGTGCCAAAGAAAATAATGGTCTTGGACAGAAAGCACTAGAAGAGAATAATGATAGGCCAAAGAAGAGCTTAAATGGCGGTGCCAAAGAAGGGAATGGTCTTGAACAGAAAGCTCTAGAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAGTGGCGGTGCCAAAGAAGAGAAAAGTCTTGGAAAGAAAGCACCAGAAGAGAAAGGCCATAATGATCCCACTGCTGTCTTACAGACTAGTGTGAAGAATGTAGATGAAAAAATTGGAGTTAGCGAAGACTTAAATGGCGGTGACAAAATAATCAGCAACAATTACCAAAGAAGAGCTTCACTACCTGCTAATTTTAATGATCAAGAAAATGAGTTACATAACACTCCAAGATTGCCGAGTTATATGGCTCCTACTGAATCAGCAAAAGCTAGGCTAAGGGGACAAGGCTCCCCAAGATTTGCTACTGATATCTTAGACAAAAACAGTTTAACCAGGAGGCATTCACTTTCATCTTCTATTAACAGCAAGTCAGGTTCTTTTTCCCCAAGAGCAGAAAAGCTGTTAACCTTGAGCGGAAGAGGAGTTGCGAGGACTGATAAATCTCTGTCATCTTCAAGGGACAAATCTCTGTCATCTTCAAGGGATGGGACTGATAAGATGACACAACCTCAGTGGAGAAGGTGA 2160 0.4102 MGKGRSPGKWIKNLLYGKKSSSNSKSSSSKKNDIFKSSSNKDPLGSSELTVSNPIPTMDSLMISAPISGFNAAKGVVSEKEVINGPSREREILSNGDGEGRAEAVANFASQDDRETVRLTEAAIKLQSACRGYQARREFQTFKSITQLQALIRGHLVRRQAVSALYCVKKIVKFQALARGYNVRRSDIGLEVLKIRKDTQLSKPIGVVTSREAEKLSENVFVRKLLASSPHAFPLSFNTDLGEPYLAWKWLDRWTRSHFWASLPKLKKFDSVSDEKNISCQTVEKGQVKRNTRKSPAVKADDSSSSGSNKYKQRPKKDLNHSLVSAQEHPKKEIEKSSLKKTRMQNVSDRSEAVNEKRKQSSRTTTDHNVTDVAERGPNSSSEKMKDTMVPKSEESYPEKVLGQKTPEENNDKPKKSVNGGAKEEKGLGQKTLEENNNKPKKSFNGSAKGLGQKALEENNDKPKKSLNGSAKEEKGLGQKALEENSDKPKKSLNGSAKENNGLGQKALEENNDRPKKSLNGGAKEGNGLEQKALEENNDKPKKSLSGGAKEEKSLGKKAPEEKGHNDPTAVLQTSVKNVDEKIGVSEDLNGGDKIISNNYQRRASLPANFNDQENELHNTPRLPSYMAPTESAKARLRGQGSPRFATDILDKNSLTRRHSLSSSINSKSGSFSPRAEKLLTLSGRGVARTDKSLSSSRDKSLSSSRDGTDKMTQPQWRR 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02557 719 PANTHER IQ-DOMAIN 5-RELATED 1 667 - -
Trre10g02557 719 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
Trre10g02557 719 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
Trre10g02557 719 MobiDBLite consensus disorder prediction 16 51 - -
Trre10g02557 719 Pfam Protein of unknown function (DUF4005) 613 684 IPR025064 -
Trre10g02557 719 MobiDBLite consensus disorder prediction 283 596 - -
Trre10g02557 719 MobiDBLite consensus disorder prediction 1 51 - -
Trre10g02557 719 MobiDBLite consensus disorder prediction 656 676 - -
Trre10g02557 719 Pfam IQ calmodulin-binding motif 169 185 IPR000048 GO:0005515
Trre10g02557 719 Pfam IQ calmodulin-binding motif 120 140 IPR000048 GO:0005515
Trre10g02557 719 Pfam IQ calmodulin-binding motif 143 160 IPR000048 GO:0005515
Trre10g02557 719 Gene3D - 113 165 - -
Trre10g02557 719 MobiDBLite consensus disorder prediction 697 719 - -
Trre10g02557 719 MobiDBLite consensus disorder prediction 529 565 - -
Trre10g02557 719 MobiDBLite consensus disorder prediction 311 365 - -
Trre10g02557 719 MobiDBLite consensus disorder prediction 455 494 - -
Trre10g02557 719 MobiDBLite consensus disorder prediction 379 438 - -
Trre10g02557 719 MobiDBLite consensus disorder prediction 612 719 - -
Trre10g02557 719 SMART iq_5 143 162 IPR000048 GO:0005515
Trre10g02557 719 SMART iq_5 166 188 IPR000048 GO:0005515
Trre10g02557 719 SMART iq_5 118 140 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02557 Trre-Chr10 32704820 32710408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02557 412 719 IQD Protein Family AT1G14380 33.125 3.78e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02557 - - tpra:123907401 1201.42