Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02553 ATGACAAGTCTCAAGAGTCTTGTTTTGGCTGATAATTTTTTCAATGGAAGTGTTCCTAATCTTAAAAGATTAGTCTCTCTTGAAGAGATTAATTTTGTTAATAACAGATTAGGACCTGAATTTCCATCATTTTTGTTCTCACTTCCTTTGCTAAATCACCTAAACTTGGCTTCAAATCAATTCAATGGTTCAATTTCTTTGAATATATCTTGTGATTCTGCTCTTACATTTGTTGATATCTCAAACAATTTTCTACAAGGAAATGTTTCATCCTGCATTGATTCGAATTCGTTGAATCGAACGATAGTTTATTCCGGTAATTGCTTATTAAGCAGAAATCTCAGTGATCAACATCCATCTTCATATTGCAATAAATCGACGGCCTTTTCTACTAAGTCGACAAGATTTGAGAGACGGAATGAATCAAAGATGCAACTAGGAACAATACTTGGTATTGTTGGAGGTTTTGTTGGAATTGTAGGACTTATGATTATACTTTTTCTTTTCATTTCGAAAAAGTCCGAAACAAAAAATGCAGTAAAATCTGTTGATGATAGAGTTTCTGTCACTGCATATTCAAGACCAAATATTTTTACAAGGAATAATGTTCCAAAGCTAATGAGGCTAGCTTCAATTGGATTAAGACCATACCACATTTTCACAATAGAAGAAATTGAAGATGCAACCAATAAATTTGATCCATCAAATCTAATAGGAGAAGGATCACAAGGGCAGCTATATAAAGGTAAGGTCAAAGATGGTTCAAGGGTGATGGTTAATATTGTAAAACTAAAGCAGAAGAGTTTGAGCAAAATCTATGATGAGAACTTGAAGGTGTTACCTTGTTTAAGGCATAGGCATTTGGTGAGTGTGTTAGGACACTGTGCCATTACTTATAAGGACAATCCCAACATGACAAGCACAATATTCATTGTATCTGAGCATATCTCAAATATGTCATCATTGAGGATATATCTTACAGATAGGAGAAAAATGCTGAAGTGGAAACAAAGAATGACAATTATGATAGGAATTGCAAGAGGAATTCAATACTTACATAGAGGAGTTAATCATGGAATATTTGGAAACAACTTAAAGATTGAGAATATTCTATTGGACAATAATCTCAATCCAAAAGTTAGTGGATATAGCATTCCATTTCCATCCAAGAAAGGTTCTGAAAAAAAACTTAAAGAACAAAATTCACACAATCATATTGGCAGCATCAATAATGCAGAAAAGGAAGACATATATCAATTTGGTGTGATTCTACTTGAAGTTATAACTGGGAAACTAATTACATCTTCTATTGAAGTAGAAGTTTTGAAATATGAGCTTGAGAGAGGTTTATCTGAAGTTGCATCACCAACTGCATTGAGGAGCGCAATCGATCCTTCTCTTCATGGAACTTATACACACGAATCGTTAAAGACTGCAATTCAGATCACCGTCAATTGTCTCAATAAGGTTCCCGGTAATCGTCCTTCGATAGAAGATATTCTCTGGAATCTGCAGTACTCCATGCAAGTTCAAGAGGCAAGGTCTAGCATAACATCATCATGA 1563 0.3417 MTSLKSLVLADNFFNGSVPNLKRLVSLEEINFVNNRLGPEFPSFLFSLPLLNHLNLASNQFNGSISLNISCDSALTFVDISNNFLQGNVSSCIDSNSLNRTIVYSGNCLLSRNLSDQHPSSYCNKSTAFSTKSTRFERRNESKMQLGTILGIVGGFVGIVGLMIILFLFISKKSETKNAVKSVDDRVSVTAYSRPNIFTRNNVPKLMRLASIGLRPYHIFTIEEIEDATNKFDPSNLIGEGSQGQLYKGKVKDGSRVMVNIVKLKQKSLSKIYDENLKVLPCLRHRHLVSVLGHCAITYKDNPNMTSTIFIVSEHISNMSSLRIYLTDRRKMLKWKQRMTIMIGIARGIQYLHRGVNHGIFGNNLKIENILLDNNLNPKVSGYSIPFPSKKGSEKKLKEQNSHNHIGSINNAEKEDIYQFGVILLEVITGKLITSSIEVEVLKYELERGLSEVASPTALRSAIDPSLHGTYTHESLKTAIQITVNCLNKVPGNRPSIEDILWNLQYSMQVQEARSSITSS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02553 520 Gene3D Phosphorylase Kinase; domain 1 197 301 - -
Trre10g02553 520 SUPERFAMILY Protein kinase-like (PK-like) 213 504 IPR011009 -
Trre10g02553 520 ProSiteProfiles Protein kinase domain profile. 232 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02553 520 Gene3D Transferase(Phosphotransferase) domain 1 318 519 - -
Trre10g02553 520 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 505 - -
Trre10g02553 520 SUPERFAMILY L domain-like 2 111 - -
Trre10g02553 520 Pfam Protein kinase domain 235 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02553 520 Gene3D Ribonuclease Inhibitor 1 138 IPR032675 -
Trre10g02553 520 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 316 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02553 Trre-Chr10 32656169 32658620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02553 4 513 Miscellaneous Gene Families AT3G03770 38.104 1.41e-112 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre10g02553 Pkinase 5.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02553 - - mtr:11414733 759.599