Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02547 ATGAAGATATTACAGGCACAATCCTATACAACCACTACAAACCCATTTTCAGTCCCAACTCACTCTTTCATAACTCCCAAAATATCCATTCCTTTAAGGCATGTGGGTCCCACTTTCTCCTCCACTCTCTCACAATTCTCTATCACATGTCGCCGCCCATATCCTTTCCAACCCAAACCATTCCCCCCACCACCACCTCAACCTCCTCCTCCTTCATCATCTTCTTCAGTAGGAAAATTGCCAGCAAAGGTTTATGTTGGTCATTCAGTTTACAAAGCAAAAGCTGTACTCACTGTGTCTCCTAGACCTCCACTATTCACTACATTGAAGTCAGGGGCATTCGAGGTATGTAGAGAAGGTTGTGTCCTGTTACAGTTTGCTCCTGCTACTGTTGCGTATCAATATGATTGGAACAGAAAACAGGTATTTTCGCTATCTGTGGCTGAAATGGGAAATCTAATAAGCCTTGGTCCAAGGGAGTCTTATGAATTTTTTCATGATCCTTTTATTGGAAAAAGTGATGAAGGTAAAGTGAGAAAATATTTGAAGGTGGAGCCACTTCACGACCGTTCTGGTCACATGTTTAACATAAGTGTTCAAAATGAGCTCGAGAACATAAACGAAAACATATCAATCCCTATCACAAAAGGAGAATTTGCAGTTTTTGATTCACTTTTCAATTTTATCATGCCATGCCTTTTAGGTTGGACTGCCTTTGCCAACTCCATAAAGCCAGAGGTATATAATAGAAATCCAAGAAATGAAGATTTTGGATGGAACAATTTCACCAGAATAATCTGA 801 0.402 MKILQAQSYTTTTNPFSVPTHSFITPKISIPLRHVGPTFSSTLSQFSITCRRPYPFQPKPFPPPPPQPPPPSSSSSVGKLPAKVYVGHSVYKAKAVLTVSPRPPLFTTLKSGAFEVCREGCVLLQFAPATVAYQYDWNRKQVFSLSVAEMGNLISLGPRESYEFFHDPFIGKSDEGKVRKYLKVEPLHDRSGHMFNISVQNELENINENISIPITKGEFAVFDSLFNFIMPCLLGWTAFANSIKPEVYNRNPRNEDFGWNNFTRII 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02547 266 MobiDBLite consensus disorder prediction 57 75 - -
Trre10g02547 266 Pfam Whirly transcription factor 90 224 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre10g02547 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 72 257 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre10g02547 266 SUPERFAMILY ssDNA-binding transcriptional regulator domain 83 253 IPR009044 GO:0003677|GO:0006355
Trre10g02547 266 Gene3D Transcriptional Coactivator Pc4; Chain A 75 249 IPR009044 GO:0003677|GO:0006355
Trre10g02547 266 MobiDBLite consensus disorder prediction 57 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02547 Trre-Chr10 32619388 32622850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02547 6 260 Whirly Transcription Factor Family AT1G14410 52.692 3.17e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trre10g02547 Whirly 3.6e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02547 K26559 - pcin:129310571 263.848