Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02540 ATGGCGAAATTGTACTATCTGTACATTTTGACATGTTTGGTAGTAATCATACCTACATTAGTGCATGCTAATGTCAAAGAAGAAAAATCATATTGGGATAAGGTGTCTCCAACGCTAAAGGATCCATATTGGTCGGAAAAAGCAACGATCGCTGCAAGGACGAATGACGAAGCTTATACTCCTGACCCATATGAAGTCTCCGAAAACCTGACTTCTAGCGTAAACAGAATGATAATCGGAGGAAATGAAAAAAGAAGGAATTTGGGGGGGAGTAAAATACTTGGTCCATGCCAGGCTACAAACCCGATTGACAGGTGTTGGAGGTGTGATCCTAACTGGGAAAAAAATCGAAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACAACTGGTGGAAAAGCCGGTCCCTTCTACGTGGTATCTGATCCTACAGATGCTGACATGTTGAATCCACGTCCAGGTACGCTTAGGCACGCAGTTACAAGAAATGGACCATTGTGGATCATCTTCGCTCGTAGCATGAACATTAGGCTCAGCCAGGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAACTGATATTGTCATTGCTAATGGTGCTGGTATTACTATCCAGTATATTACGAATGTGATCATCCATGGGATCAAAATTTTCGACATTGTGGTTGGAAGTGGAGGAATGATCAGAGATGCTGAGAACCATTATGGTTTAAGGACTATGAGTGATGGTGATGGAATTTCAATTTTCGGCGCCAGTAATGTTTGGATTGATCATGTTTCCATGAGAAACTGCAGAGATGGACTCATTGATGCCATTATGGGATCAACTGGTATTACCATCTCCAATAGCCATTTCACAGATCACAATGAGGTGATGTTGTTTGGTGCAAGTGATGGCTTCGATGGTGATCAGAAAATGCAAATCACAGTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATATGGTTTGATCCATGTACTTAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGTAGCAAACACCCTACCATTATAAGCGAGGGTAACCGATTCATAGCCCCTAACAACGGCTTTGCTAAAGAGATAACAAAGAGGGAGTACACACCAGAGGCGGAGTGGAAAAGCTGGACATGGAGATCAATAAACGACGTGTACATGAACGGAGCGTTTTTCATACAAAGTGGATCTGACCTGACAAACAGACCATTCTCAAGTAAGGAAATGATCACAGCTAAGCCTGGAACTTATGTGGGAAGGCTTACTCGTTATTCTGGATGCCTTAGGTGTATAGTGGGGAAACCTTGTTAA 1353 0.4257 MAKLYYLYILTCLVVIIPTLVHANVKEEKSYWDKVSPTLKDPYWSEKATIAARTNDEAYTPDPYEVSENLTSSVNRMIIGGNEKRRNLGGSKILGPCQATNPIDRCWRCDPNWEKNRKKLADCVQGFGRKTTGGKAGPFYVVSDPTDADMLNPRPGTLRHAVTRNGPLWIIFARSMNIRLSQELIMTSDKTIDGRGTDIVIANGAGITIQYITNVIIHGIKIFDIVVGSGGMIRDAENHYGLRTMSDGDGISIFGASNVWIDHVSMRNCRDGLIDAIMGSTGITISNSHFTDHNEVMLFGASDGFDGDQKMQITVAFNHFGKRLIQRMPRCRYGLIHVLNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNGFAKEITKREYTPEAEWKSWTWRSINDVYMNGAFFIQSGSDLTNRPFSSKEMITAKPGTYVGRLTRYSGCLRCIVGKPC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02540 450 Gene3D - 100 443 IPR012334 -
Trre10g02540 450 SUPERFAMILY Pectin lyase-like 101 440 IPR011050 -
Trre10g02540 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Trre10g02540 450 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Trre10g02540 450 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Trre10g02540 450 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Trre10g02540 450 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Trre10g02540 450 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Trre10g02540 450 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Trre10g02540 450 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Trre10g02540 450 Pfam Pectate lyase 185 366 IPR002022 -
Trre10g02540 450 PANTHER PECTATE LYASE 18-RELATED 53 448 IPR045032 GO:0030570
Trre10g02540 450 Pfam Pectate lyase, N terminus 41 88 IPR007524 GO:0030570
Trre10g02540 450 SMART amb_all 175 372 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02540 Trre-Chr10 32564664 32566715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02540 5 450 Polysaccharide Lyase AT1G14420 57.701 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02540 K01728 - gmx:100796307 729.169