Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02538 ATGTCATTTAGTCATCACCCTGAATTTCATAGGATAATATTGCAAGATAAGAAGCTTAGGATTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATGTCAAACCCAATATTCCTTAGATTTCCAAATGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTGATGGTGATATTTGCTTTCAAAAAAATTGGGAAAATTTTGCAAAGTGTCTCAAATATGGAAATCTCTTAACTTTTAAATACATAAGTGGACCATATTTCAAGGTTAAGATATTTGGTGTCAATGCTTTGGAAATAAACTATTCCAATATAAAATCCGTAGAAGATAAAGAAGTTATTGAAGTTAGTGACGATGAGAATGATGAAGATGAGTCTGTAGATAAGAGTGAAGATGAGAGTGAGGAAGATGAGTTTGAAGATAAGAGTGAAGATGAGAGTGAGGATGAAAGTGAAATAGTGAAGCAACCACAAAGGACAACAAATAGGAAGAGAAAAATTCATATGGATTTGCATTCAAGGAGTAACAGAGAAGGCATGGTCAAAAAGGTTAAAAATTGTTCAACAAGTGAGAATCCCTTTTTTAAAGTTACATTGTCAGATTGTTACGCCAATGGCCATTTCTTGATGGTACCAAGTAAGTTCTCTAGAAAATACTTGAACAATTTTGTAGGCAGGGCAACCCTACAAGTTGGTAAGGGCATGCCTTTGAAAGTGGAGATGAAGTTTGATAACAAAAATAGAAGATCTACTATAAGTAGTGGCTGGAAGTTATTTAGGGAAAAATATAACTTGCAAGTTGAGGATTCTTGTAAGTTTGTGATGATTCAACGCCGACCACTTTTGTTCGCTGTAATCATTGAACGAGCCACAAAGGGACCAAGCCCTAAGATATTGCATGGTTTGAGGCAAGTTGGAGGCAATTTGTGGAAGAAATCAAAATAG 942 0.3493 MSFSHHPEFHRIILQDKKLRIPKKYVEKYWKGMSNPIFLRFPNGVEQKIFWVESDGDICFQKNWENFAKCLKYGNLLTFKYISGPYFKVKIFGVNALEINYSNIKSVEDKEVIEVSDDENDEDESVDKSEDESEEDEFEDKSEDESEDESEIVKQPQRTTNRKRKIHMDLHSRSNREGMVKKVKNCSTSENPFFKVTLSDCYANGHFLMVPSKFSRKYLNNFVGRATLQVGKGMPLKVEMKFDNKNRRSTISSGWKLFREKYNLQVEDSCKFVMIQRRPLLFAVIIERATKGPSPKILHGLRQVGGNLWKKSK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02538 313 Gene3D - 172 291 IPR015300 -
Trre10g02538 313 SMART B3_2 193 289 IPR003340 GO:0003677
Trre10g02538 313 SMART B3_2 9 95 IPR003340 GO:0003677
Trre10g02538 313 SUPERFAMILY DNA-binding pseudobarrel domain 6 95 IPR015300 -
Trre10g02538 313 PANTHER B3 DOMAIN-CONTAINING 3 277 - -
Trre10g02538 313 CDD B3_DNA 193 288 IPR003340 GO:0003677
Trre10g02538 313 MobiDBLite consensus disorder prediction 112 171 - -
Trre10g02538 313 Gene3D - 1 96 IPR015300 -
Trre10g02538 313 Pfam B3 DNA binding domain 193 280 IPR003340 GO:0003677
Trre10g02538 313 ProSiteProfiles B3 DNA-binding domain profile. 193 290 IPR003340 GO:0003677
Trre10g02538 313 SUPERFAMILY DNA-binding pseudobarrel domain 189 285 IPR015300 -
Trre10g02538 313 MobiDBLite consensus disorder prediction 113 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02538 Trre-Chr10 32461975 32463649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02538 7 288 B3 DNA Binding Superfamily AT3G18990 24.277 2.57e-18 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre10g02538 B3 7.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02538 - - tpra:123913598 311.997