Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02528 ATGGAATCAAACTCAATTTCAATAAAACAATCCTTCGAAAAATTTTACTCACACCACGCGCGCGAATCGCTCGACGAATTGTCTGAAAATTTTACAATAACCGACCCTTCAATTTCAGGCCATCCTATTATCTTCGCAAGTCACGCGTTTCTTAAGATGACTGGTTTCACGCGCGATGAAGTTGTTGGACGAAGTGGTTCCATTTTTCAAGGTCCTGCTACTTGTCGTAGGTCGGTGTTGGAAATTCGTGAAGCTGTTAGGGAAGAAAGAGAGACTAATGTTGTTTTGGTTCCTTTAGAAACAAGATCGAGGGTTTGTAGTAGTAGTAGTTCTTCTGTTCAGGTTCATGATTTTGTTTTTCGTTGTTGTCGGAAAGAAGTTTGTTCTGATTCTTTGGCTGAACTTGGTCGTGTTTCTTCTGGGAGGAATCAAGTGTTGGAACATGATGTCACGGAATTAGAGAGTGAAGAGCCACGTGAGCCAAGTGACGATGAGAGGAGAAGTGCGGTGACTGCCATGGACAACATCTTTTCTGTGCTAACCCACTATAGCGAGTTGACAGGGAGATTGGTGTGTCGAAAGAGATGCAGCATTCCTGACGTGGGTCTTCTTTGCTCTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGTTTATGCCAGTGACGCCTTCATGAAATTGACAGGTTATGCGAGAGACGAGGTATTGGGCCGCAACTGTAGATTTTTAGGTGGAAGAAATACCGATGACTCAGCTCTACATCTGATAACAGAAAGCATAAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATCTCACCTGTTCGGGATGCTTCTGGAAAGGTAGCATATTTTGTGGGAGTTCAAATAGAAGACGACTATAAAAACGAGGACTATAGACAGTGTTGGAGACCTGACATGAAACAGCTTAGTGTGGTTGGTGTAGTCAAAGTTGCAGTGAGGAGTTTATCCATGTCTGCTGGATCGTCTAAGAGATAG 1083 0.4201 MESNSISIKQSFEKFYSHHARESLDELSENFTITDPSISGHPIIFASHAFLKMTGFTRDEVVGRSGSIFQGPATCRRSVLEIREAVREERETNVVLVPLETRSRVCSSSSSSVQVHDFVFRCCRKEVCSDSLAELGRVSSGRNQVLEHDVTELESEEPREPSDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSIPDVGLLCSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYARDEVLGRNCRFLGGRNTDDSALHLITESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEDDYKNEDYRQCWRPDMKQLSVVGVVKVAVRSLSMSAGSSKR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02528 360 CDD PAS 227 316 IPR000014 -
Trre10g02528 360 Pfam PAS domain 218 317 IPR000014 -
Trre10g02528 360 Pfam PAS domain 41 93 IPR000014 -
Trre10g02528 360 MobiDBLite consensus disorder prediction 149 168 - -
Trre10g02528 360 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Trre10g02528 360 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 94 IPR035965 -
Trre10g02528 360 Gene3D PAS domain 218 350 - -
Trre10g02528 360 NCBIfam PAS domain S-box protein 231 316 IPR000014 -
Trre10g02528 360 ProSiteProfiles PAS repeat profile. 231 253 IPR000014 -
Trre10g02528 360 PANTHER PROTEIN TWIN LOV 1 6 98 - -
Trre10g02528 360 FunFam protein TWIN LOV 1 218 355 - -
Trre10g02528 360 SMART pac_2 281 323 IPR001610 -
Trre10g02528 360 SMART pas_2 18 91 IPR000014 -
Trre10g02528 360 SMART pas_2 206 279 IPR000014 -
Trre10g02528 360 SUPERFAMILY PYP-like sensor domain (PAS domain) 221 317 IPR035965 -
Trre10g02528 360 Gene3D PAS domain 12 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02528 Trre-Chr10 32265049 32269341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02528 23 97 AGC Kinase Gene Family AT5G58140 42.667 1.42e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02528 - - gmx:100785562 470.7