Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02512 ATGGCAGGTGGCAAGCTTTTTGGTGGTTCTAATATGTCTCTTTTGCTTCAAAATGAAAGACTCCCTTGTTCCTCTGAAGTCCTTGAATCTCTTTGGGGTCACACCCCTGCTTCTTTTCATGGTTCAAATTCAGTGGTTGATTTTGAGAATGGTGGTGGTGGAAACAGAGTGGTAACAGATAGATCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGATGATTATGAAGCATGTTTCCATCAACAAGGTAAAAAAAGGAGGCTTTCAAGTGAACAAGTTCAGTTCCTTGAAAAGAGCTTTGAGGTAGAAAACAAACTTGAACCTGAAAGGAAAGTTCAACTTGCAAAAGATCTTGGTTTACAACCAAGACAAGTTGCTATATGGTTCCAAAATAGAAGGGCAAGGTTCAAAACTAAGCAGCTTGAAAAAGATTATGGCACATTGAAAGCTAGTTTTGATTGTCTCAAAGATGATTATGATAATCTACTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTCAAGAACAAATTGAATCCAAGAGACAAAGAGAAAGAGAAATCAGATGAAAAAGAAGCTATCAATTCACCTCAAAACAACAAAGATTCTATGGATTTAATCTCAATAGGAAATTCTTCAAAAGGGTCCAAAGTGTCACTCCCTAATATGGTACTAAAATGTAAACAAGAAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCTGATAGTCCACATTGCAATGATGTGAACAATCTTTCTTCATTCATTGAGCCTACAGATTCTTCACATGTTTTTGAACCTGATCACTCAGATTTCTCACAAGATGAAGAAGATAATGATAACTTGAGTGATAATCTTTTGACCCTTCCAAAGATTGAAGATGTTTGTTATGATGACCCACATGAAAATTCTTGTAATTTTGGGTTCCCTGTTGAAGATCAAACTTTTTGTTTCTGGCCTTATTAA 984 0.3567 MAGGKLFGGSNMSLLLQNERLPCSSEVLESLWGHTPASFHGSNSVVDFENGGGGNRVVTDRSFFQQLEKEENCGDDDYEACFHQQGKKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDCLKDDYDNLLQENDKLKEEVNSLKNKLNPRDKEKEKSDEKEAINSPQNNKDSMDLISIGNSSKGSKVSLPNMVLKCKQEDANSAKSDVLDSDSPHCNDVNNLSSFIEPTDSSHVFEPDHSDFSQDEEDNDNLSDNLLTLPKIEDVCYDDPHENSCNFGFPVEDQTFCFWPY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02512 327 MobiDBLite consensus disorder prediction 176 201 - -
Trre10g02512 327 MobiDBLite consensus disorder prediction 202 221 - -
Trre10g02512 327 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Trre10g02512 327 CDD homeodomain 87 143 IPR001356 GO:0003677
Trre10g02512 327 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Trre10g02512 327 SMART HOX_1 85 146 IPR001356 GO:0003677
Trre10g02512 327 MobiDBLite consensus disorder prediction 176 221 - -
Trre10g02512 327 Coils Coil 155 182 - -
Trre10g02512 327 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Trre10g02512 327 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Trre10g02512 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 228 IPR045224 GO:0003700
Trre10g02512 327 MobiDBLite consensus disorder prediction 263 286 - -
Trre10g02512 327 Gene3D - 81 148 - -
Trre10g02512 327 FunFam homeobox-leucine zipper protein ATHB-6-like 90 136 - -
Trre10g02512 327 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Trre10g02512 327 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Trre10g02512 327 SUPERFAMILY Homeodomain-like 76 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02512 Trre-Chr10 32077893 32079803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02512 87 254 Homeobox Transcription Factor Family AT3G01470 49.123 1.15e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre10g02512 Homeodomain 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02512 - K09338 zju:107428804 381.333