Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02507 ATGAGTCGTAAGAGAGACAACTCCCACTTTTCCCGCCACGACTTCAAGCGCCGTCGTCCACTACCGGAGCCAGCGGAGGAAGAAAGACCCACCACAAGGCCAACGCCACCATCTGCAGTAGTCGTCATGAGTCTTCCTCTTGACTGTTCCGTCCTCGATCTCAAGTCTCGGTTCGAGATCTACGGCTCCATCTCCCGCATCCGTATCGACCGTGACGCCGTCGGATACATCACCTACCGGACTAAAGACTCCGCCGACGCCGCCATTGCTGCTGGCCTTGATCCTTCGTTTGGAGTCACCGTTAATTCCAAAAAGGTTCAGGTGTTGTGGGCAACGGATCCTCTAGCAATGTGGAGGGAAGGAGTTGGCAAGAACAAGGATAGTGTGTCTATGTCAAAACTTGTGCGAGCCGAGGTTCCTTTGAGGAGGCATGGAAGAGGTAATAAACTTGCTTCTGCTATTGGGAATACCAAAAGTAGTGAGGATGGTTCTGGTAGCTCAGTTCTTGAAGTTCCTTTCAAGGGAAGAGAAATTGTTGCTTATGATGATATCTTGTAA 558 0.5072 MSRKRDNSHFSRHDFKRRRPLPEPAEEERPTTRPTPPSAVVVMSLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRTKDSADAAIAAGLDPSFGVTVNSKKVQVLWATDPLAMWREGVGKNKDSVSMSKLVRAEVPLRRHGRGNKLASAIGNTKSSEDGSGSSVLEVPFKGREIVAYDDIL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02507 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Trre10g02507 185 Gene3D - 1 115 IPR012677 -
Trre10g02507 185 SMART rrm1_1 39 109 IPR000504 GO:0003723
Trre10g02507 185 MobiDBLite consensus disorder prediction 1 38 - -
Trre10g02507 185 SUPERFAMILY RNA-binding domain, RBD 26 119 IPR035979 GO:0003676
Trre10g02507 185 CDD RRM_SF 40 108 - -
Trre10g02507 185 PANTHER GEO13361P1-RELATED 33 140 - -
Trre10g02507 185 MobiDBLite consensus disorder prediction 16 30 - -
Trre10g02507 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02507 Trre-Chr10 31821996 31823333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02507 1 185 Homeobox Transcription Factor Family AT1G27050 52.195 3.48e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02507 - - ccaj:109806897 283.878