Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02470 ATGTCTCCCTTTCCCTTAACCATTACCCTCTCCTTCCTCATCCTCTTCCTACTCTTCCCCACATCCACACAAACATGCTCTTCCATCAATAACACAACTAAATTACACTCTTGCCCTCCATTCTCATCCACTCCACCTTTCCCATTCTCAACCTCACCAGGCTGTGGCCACCCTTCCTTCCAACTAACCTGCTCATCCCCTCACTCTTTCCTCACCATCAACAACCTCACTTTCTCAATCCTCTCTTTCAAACCCAACACTTCCTCAATCATCCTCTCCCCTCACAACAACAACAACAACAACAACACCACTTGTCCTTCAACATCTTCAATCCCAAACAAACCAATCAACTTCTCCAACACCCCATTCACACTCTCAGATGAAACATGTTCACGTCTCTCTGTTCTCCAACCTTGTTCACCACCAACTCACCCTAACTGCAGCCTTTGTCCATGGCAATGCAAAATCATCAAAAACGCAACTGAAATTTTCAATGATTGTAGATCCATGCATCATTCTGTTTCAGATTCTGAACCTAGTTGTCAAAGTGATGTTCTTAGTTACCTCAATGAAATTCTCACGTTAGGTATAGAAATTGAATGGGATCAAGCTTTAACACAAGACACTTACTTCACAAATTGCAAAGATTGCATCGACAAGAACGGTTTTTGTGGTTTCAATTCATCAGACCCGAATCAAAACTTCATTTGTTACCAATCGAAATCAACTTTTTCACCACCGTGGATTCGGAAAATGAAGCTTAACAAAATCGCGATTTTTGCTATTATTATAGCTTTCACTTCGTTGATTCTGTTTCTATCAGTTATCATTGCGATTCTCCGAGCAAGAAAGTTAAACACGACGGTGGAGGAAGATCCAACCACCGTATTCCTCCACAACCACCGCAACGCGAATCTTTTTCCACCGGTTTTCACCTACGACGAATTAAACACTTCCACTAACAACTTCGATCCGAAGCGAAAAATCGGCGACGGCGGATTCGGCTCTGTTTATCTCGGAAACCTCCGTGACGGAAAACTCGCCGCCGTGAAACATCTTCACCGGCAAAATCACACAGCGGCATTCTCATCAAAATCATTCTGCAACGAGATTCTCATTCTCTCATCAATCGATCATCCAAATCTCGTTAAACTTCACGGTTACTGTAGCGATCCAAGAGGTTTGATTCTCGTTTACGATTACATTCCTAACGGAACCCTAGCGGAACATCTTCACGGTTCAAAGAGTAACCGGAACGGTTATAAGCTGACGTGGCAAACGCGGCTTGAGATTGCAATACAAACGGCGTTAGCGATGGAGTATCTTCATTTCTCAGTTAAACCACCGATAGTTCACAGAGATATAACGTCGTCAAATATTTTTATTGAGAAAGATATGAGAATTAAAGTTGGTGATTTTGGGTTATCAAGGTTGTTAGTTTTGCAAGAAACGAATAATCAAACGACGTCGTCTAGTGGTTTTGTTTGGACCGGTCCTCAAGGTACACCGGGTTATTTAGACCCGGAATATCATCGGTCTTTTCGGTTAACCGAAAAGAGTGACGGGTATAGTTTTGGTGTTGTTTTGCTCGAGTTGATTACGGGGCTTAAAGCTGTTGATTATTGTAGAGATAAACGAGAAATGGCACTTGCTGACATGGTCGTTTCGAGGATCCATACGGGTCAATTGAAAGAGGTACTTGACCCGGTACTTGATTTGGGTAATGACGGTGAAGCGCTTGATGCGGTGGCTGCTGTGGCGGAATTGGCTTTTCGATGTGTTGCATCGGATAAAGATGATCGACCCGATTCAAAGGAGGTTGTGGAGGAGTTGAAACGGGTTCGGTTACGGACGTCAATTAATGGTGACGTGGCGAAGGTGTGA 1884 0.4342 MSPFPLTITLSFLILFLLFPTSTQTCSSINNTTKLHSCPPFSSTPPFPFSTSPGCGHPSFQLTCSSPHSFLTINNLTFSILSFKPNTSSIILSPHNNNNNNNTTCPSTSSIPNKPINFSNTPFTLSDETCSRLSVLQPCSPPTHPNCSLCPWQCKIIKNATEIFNDCRSMHHSVSDSEPSCQSDVLSYLNEILTLGIEIEWDQALTQDTYFTNCKDCIDKNGFCGFNSSDPNQNFICYQSKSTFSPPWIRKMKLNKIAIFAIIIAFTSLILFLSVIIAILRARKLNTTVEEDPTTVFLHNHRNANLFPPVFTYDELNTSTNNFDPKRKIGDGGFGSVYLGNLRDGKLAAVKHLHRQNHTAAFSSKSFCNEILILSSIDHPNLVKLHGYCSDPRGLILVYDYIPNGTLAEHLHGSKSNRNGYKLTWQTRLEIAIQTALAMEYLHFSVKPPIVHRDITSSNIFIEKDMRIKVGDFGLSRLLVLQETNNQTTSSSGFVWTGPQGTPGYLDPEYHRSFRLTEKSDGYSFGVVLLELITGLKAVDYCRDKREMALADMVVSRIHTGQLKEVLDPVLDLGNDGEALDAVAAVAELAFRCVASDKDDRPDSKEVVEELKRVRLRTSINGDVAKV 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02470 627 Pfam Protein tyrosine and serine/threonine kinase 326 611 IPR001245 GO:0004672|GO:0006468
Trre10g02470 627 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Trre10g02470 627 ProSitePatterns Tyrosine protein kinases specific active-site signature. 450 462 IPR008266 GO:0004672|GO:0006468
Trre10g02470 627 SUPERFAMILY Protein kinase-like (PK-like) 305 611 IPR011009 -
Trre10g02470 627 ProSiteProfiles Protein kinase domain profile. 323 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02470 627 FunFam Putative serine/threonine-protein kinase At1g18390 family 299 401 - -
Trre10g02470 627 Gene3D Transferase(Phosphotransferase) domain 1 402 624 - -
Trre10g02470 627 Gene3D Phosphorylase Kinase; domain 1 299 401 - -
Trre10g02470 627 CDD STKc_IRAK 329 613 - -
Trre10g02470 627 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 618 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02470 Trre-Chr10 30911992 30913875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02470 13 626 Receptor kinase-like Gene Family AT1G69910 58.991 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre10g02470 PK_Tyr_Ser-Thr 8.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02470 - - cit:102621027 773.081