Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02453 ATGGATCCAGCGCCAATAATCAACGCTGCTCCCAACTCTCCGTCGTATCACCTTCCGGAGATCTGGAACTTCCCGCCGTCCAAAACACCGCATTTCACCAACGACTTTGGAGATTTTGTAATGGAAGATCCTGCCAGAGAGCAGAAACCGTTCAACCATGGCCGGAAAAGGCGCGACACGGTGGAGGATTCGGTTAAAGGCGTTTCCACCAGCAATGGCGGTGGCAATAGCAACGCCGTGAATGATGGTGGTGATGGAAAAAGGAGTAAGACAAGGAATGAGAGCAATAAAGGTGAAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAGAAACTAGTGATCAGCCAAATCCTAAGCAGGACTACATCCATGTCCGAGCTAGAAGAGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCCAGAAGGGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGTAAAGCATTGGTCCTTGATGAGATAATCAACTATATCCAATCACTTCATCACCAAGTAGAGTTTTTGTCGATGAAGCTAGAAGCAGTAAATTCAAGATTGACACCTGGTATTGAAGTGTATCCTCCTAAAGATTTTGATCAGCAAAGATACGATACAACCGCCATACCATTTGCTTCACAAGCTACAAGAGAGTACAACCGGGTTTCATCACCAGAGTGGTTACATATGCAGTTGGGAGGTGGTTTTGAAAGAGCAACGTAG 759 0.4545 MDPAPIINAAPNSPSYHLPEIWNFPPSKTPHFTNDFGDFVMEDPAREQKPFNHGRKRRDTVEDSVKGVSTSNGGGNSNAVNDGGDGKRSKTRNESNKGEGEENSSGKHAEETSDQPNPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRLTPGIEVYPPKDFDQQRYDTTAIPFASQATREYNRVSSPEWLHMQLGGGFERAT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02453 252 Gene3D - 128 202 IPR036638 GO:0046983
Trre10g02453 252 FunFam Basic helix-loop-helix transcription factor 128 200 - -
Trre10g02453 252 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 52 222 IPR024097 GO:0006355
Trre10g02453 252 MobiDBLite consensus disorder prediction 26 119 - -
Trre10g02453 252 MobiDBLite consensus disorder prediction 40 64 - -
Trre10g02453 252 SMART finulus 137 187 IPR011598 GO:0046983
Trre10g02453 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 199 IPR036638 GO:0046983
Trre10g02453 252 MobiDBLite consensus disorder prediction 65 84 - -
Trre10g02453 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 181 IPR011598 GO:0046983
Trre10g02453 252 CDD bHLH_AtBPE_like 121 204 - -
Trre10g02453 252 MobiDBLite consensus disorder prediction 85 119 - -
Trre10g02453 252 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02453 Trre-Chr10 30548009 30550979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02453 1 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 52.991 1.05e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g02453 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02453 - - psat:127119455 339.732