Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02427 ATGCTTCATGTTTGTCTTAGATGTCACAAAACCTTCAAATCTCGACATGGTTTACATGTCCATGTAGGTTCTCACACTGTAACACGATGCGACCAATGCGGAGAAATATTCTCATCTCCTCAAGCTTGTGCTCATCATAGGAAGACTCATCAAATAATAGTATATCATCCACCACCACATCCACCGATTCCAGAAATACCTTTCCAGTGCAATTGTTGTGAAAGCAAATTTTCCACCGCAGAAGAACTGGAAAACCATAAAGCTAATCGCCATAGAGTTTGA 282 0.4043 MLHVCLRCHKTFKSRHGLHVHVGSHTVTRCDQCGEIFSSPQACAHHRKTHQIIVYHPPPHPPIPEIPFQCNCCESKFSTAEELENHKANRHRV 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02427 93 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Trre10g02427 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 93 IPR013087 -
Trre10g02427 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 50 IPR013087 -
Trre10g02427 93 SUPERFAMILY beta-beta-alpha zinc fingers 29 87 IPR036236 -
Trre10g02427 93 Pfam C2H2-type zinc finger 27 51 - -
Trre10g02427 93 ProSitePatterns Zinc finger C2H2 type domain signature. 70 91 IPR013087 -
Trre10g02427 93 Gene3D Classic Zinc Finger 26 93 - -
Trre10g02427 93 ProSitePatterns Zinc finger C2H2 type domain signature. 5 25 IPR013087 -
Trre10g02427 93 ProSiteProfiles Zinc finger C2H2 type domain profile. 3 30 IPR013087 -
Trre10g02427 93 SMART c2h2final6 68 91 IPR013087 -
Trre10g02427 93 SMART c2h2final6 3 25 IPR013087 -
Trre10g02427 93 SMART c2h2final6 28 50 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02427 Trre-Chr10 30042449 30042730 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g02427 zf-C2H2_6 0.0018 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02427 - K09228 lroh:127153575 66.2402