Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02424 ATGTCTCTATCTCGCACGTGCTCACACTGCGGCAACAACGGCCACAACTCTCGAACATGCAACGACGGAGGAGGAGGCGGTGGAGGAGAAAACAGCATCATGATTTTCGGCGTTAAACTCACCGCTGGAACCACCACCAACACCGCAGCCGCCACAACCACCACCACCACCACTACGAACACCATCCACAATAATCCTTTTAGAAAAAGTGCCAGCATGACTAACCTCTCTCAATACCAACAACAGCCGCCTCAAGATTCAACATCCGCCGATGCCGGTTATGTCTCCGATGACGTTGTTCATGCTTCCGGCCGATCCCGCGAACGCAAACGAGGTGTTCCTTGGACAGAGGAAGAACACAAGTTGTTCCTGTTGGGGTTGCAACAGGTTGGTAAAGGTGATTGGAGAGGAATTTCTAGAAACTTTGTCAAAACTCGTACACCAACTCAGGTTGTAAGTCATGCTCAGAAGTATTTTCTCCGCCGTCATAACCAGAACCGTCGCCGCCGGAGATCTAGTCTCTTTGATATCACCACTGATACGGTGATGGAATCTTCAACTATGATTGATGATGAACAATTTCAGCAAGAAACCGTGGTGCCTCTACCTCCACCTACCCCCACCGCATATCCATCCTCACACTATGGCGGCATCCCCGGGACCCCTTTCCCGATTGGTCTTGGTCCGGTAGCATTGCCGGTAATGAGTGGTGAAAGAACAGCCAAGCCAATTAGACCAACACCAATGTTGCCTCCTTCTTCTAAGATGGCTAATTTGAACTTGAGAGACAAGGCATCTTCTTCCATTGAGCCTTTCCCATTGTCATTGAAGCTGCATTCTTCACCTCCATCGAACGATCATTCACCAGAAACTAGCGGCCATTCGTCACCATCGGCTTCGTCGTCGACTTTTAATTCTTTGTCTGCAGGGAATTATAGTGGTGGGGGTGGGGATAGCATTATCAGTGTTGCCTGA 975 0.4964 MSLSRTCSHCGNNGHNSRTCNDGGGGGGGENSIMIFGVKLTAGTTTNTAAATTTTTTTTNTIHNNPFRKSASMTNLSQYQQQPPQDSTSADAGYVSDDVVHASGRSRERKRGVPWTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVVSHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTMIDDEQFQQETVVPLPPPTPTAYPSSHYGGIPGTPFPIGLGPVALPVMSGERTAKPIRPTPMLPPSSKMANLNLRDKASSSIEPFPLSLKLHSSPPSNDHSPETSGHSSPSASSSTFNSLSAGNYSGGGGDSIISVA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02424 324 ProSiteProfiles Zinc finger CCHC-type profile. 7 20 IPR001878 GO:0003676|GO:0008270
Trre10g02424 324 ProSiteProfiles Myb-like domain profile. 107 159 IPR001005 -
Trre10g02424 324 MobiDBLite consensus disorder prediction 1 20 - -
Trre10g02424 324 Gene3D - 115 164 - -
Trre10g02424 324 CDD SANT 114 159 IPR001005 -
Trre10g02424 324 SMART sant 111 161 IPR001005 -
Trre10g02424 324 ProSiteProfiles SANT domain profile. 110 163 IPR017884 -
Trre10g02424 324 SUPERFAMILY Homeodomain-like 109 162 IPR009057 -
Trre10g02424 324 MobiDBLite consensus disorder prediction 273 324 - -
Trre10g02424 324 MobiDBLite consensus disorder prediction 1 21 - -
Trre10g02424 324 MobiDBLite consensus disorder prediction 278 315 - -
Trre10g02424 324 NCBIfam myb-like DNA-binding domain, SHAQKYF class 110 161 IPR006447 GO:0003677
Trre10g02424 324 PANTHER TRANSCRIPTION FACTOR KUA1 5 285 - -
Trre10g02424 324 Pfam Myb-like DNA-binding domain 114 159 IPR001005 -
Trre10g02424 324 FunFam transcription factor MYB1R1 113 164 - -
Trre10g02424 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 163 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02424 Trre-Chr10 29928804 29932958 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g02424 Myb_DNA-binding 6.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02424 - - tpra:123909419 506.523