Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02408 ATGGGTGAAGCCAAGGTTTATCTCAATGAAGTAAAGGATGCATTTAAAGACGAGATAGAAAAATATGATGATTTTTTGTGGATGATGAAAGACTACAGGGAAAAAAGATTGAATGTTGAGGGTGTGATATCAAAAGTGAAGGAATTGTTTGAAGGGCACACAGAATTATTATTGAAATTTAATACATTTTTGCCAGATGGATATGAAATCACACCTCCACAAAATGAGCCAAAGGAGATTAGAGAGACTAAAAATTTTGCTAAGAAATATTTAGACAAGGTCAAGACTCGATTTGAAAGTGAACCCCATGTCTATGAATCCTTTATGGACTTATTGAATACCTATAAAAATCAAGATAAGATTATTGATGAAGAGCTTTACCAAATGGTTATTTCACTTTTTCAAGGCCACCCGGATCTTGTTGATGGGTTTACTCATTTTTTCCCTTCTACTTAG 456 0.3355 MGEAKVYLNEVKDAFKDEIEKYDDFLWMMKDYREKRLNVEGVISKVKELFEGHTELLLKFNTFLPDGYEITPPQNEPKEIRETKNFAKKYLDKVKTRFESEPHVYESFMDLLNTYKNQDKIIDEELYQMVISLFQGHPDLVDGFTHFFPST 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02408 151 SUPERFAMILY PAH2 domain 3 66 IPR036600 GO:0006355
Trre10g02408 151 Gene3D Paired amphipathic helix 81 151 IPR036600 GO:0006355
Trre10g02408 151 PANTHER SIN3B-RELATED 4 150 IPR039774 GO:0003714
Trre10g02408 151 ProSiteProfiles PAH domain profile. 1 67 IPR003822 GO:0006355
Trre10g02408 151 FunFam Paired amphipathic helix protein Sin3 3 65 - -
Trre10g02408 151 SUPERFAMILY PAH2 domain 77 149 IPR036600 GO:0006355
Trre10g02408 151 Gene3D Paired amphipathic helix 3 65 IPR036600 GO:0006355
Trre10g02408 151 Pfam Paired amphipathic helix repeat 103 148 IPR003822 GO:0006355
Trre10g02408 151 Pfam Paired amphipathic helix repeat 20 64 IPR003822 GO:0006355
Trre10g02408 151 FunFam Paired amphipathic helix SIN3-like protein 78 151 - -
Trre10g02408 151 ProSiteProfiles PAH domain profile. 76 151 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02408 Trre-Chr10 29507134 29507909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02408 2 99 WRKY Transcription Factor Family AT4G12020 41.837 4.77e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02408 PAH 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02408 K11644 - psat:127121411 172.94