Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02407 ATGGATAACATATCTGTTGATAAAGCCATGATGTATCTCACTGAAATAAAGCATGCGTTTAAAGACGATAAGGACAAGTACAAGGAGTTTTTAAGGGCAATGACAGATATCAATGAAAGAAGAATTAATATGGCATGTTTGATGTCAGGAGTGAAGAAATTATTTAAAGGGCACAAAGAATTATTAGTGAAATTTAATACATTTTTGCCGGATGATGTCGAATATAGTGAAGTTACTTCTCAACCAAAAAAGTCAGATGATGAATATGATGAAGTTTCTTCTCAACCAAAGACGTCAAATGTGAATTTAGAATATGCTATCAAATATTTGCGCGATGTGAAGGTATATGTGTTGTCTATTTATATGATGGATGATCGATTATTATCATACATAATTGTTTTCAATGTAGAATGA 414 0.3116 MDNISVDKAMMYLTEIKHAFKDDKDKYKEFLRAMTDINERRINMACLMSGVKKLFKGHKELLVKFNTFLPDDVEYSEVTSQPKKSDDEYDEVSSQPKTSNVNLEYAIKYLRDVKVYVLSIYMMDDRLLSYIIVFNVE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02407 137 FunFam Paired amphipathic helix protein Sin3 8 70 - -
Trre10g02407 137 PANTHER SIN3B-RELATED 6 114 IPR039774 GO:0003714
Trre10g02407 137 Gene3D Paired amphipathic helix 8 70 IPR036600 GO:0006355
Trre10g02407 137 ProSiteProfiles PAH domain profile. 2 72 IPR003822 GO:0006355
Trre10g02407 137 SUPERFAMILY PAH2 domain 3 72 IPR036600 GO:0006355
Trre10g02407 137 Pfam Paired amphipathic helix repeat 25 69 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02407 Trre-Chr10 29487823 29488331 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02407 1 109 WRKY Transcription Factor Family AT4G12020 29.167 4.79e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02407 PAH 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02407 K11644 - tpra:123904389 126.331