Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g02407 | ATGGATAACATATCTGTTGATAAAGCCATGATGTATCTCACTGAAATAAAGCATGCGTTTAAAGACGATAAGGACAAGTACAAGGAGTTTTTAAGGGCAATGACAGATATCAATGAAAGAAGAATTAATATGGCATGTTTGATGTCAGGAGTGAAGAAATTATTTAAAGGGCACAAAGAATTATTAGTGAAATTTAATACATTTTTGCCGGATGATGTCGAATATAGTGAAGTTACTTCTCAACCAAAAAAGTCAGATGATGAATATGATGAAGTTTCTTCTCAACCAAAGACGTCAAATGTGAATTTAGAATATGCTATCAAATATTTGCGCGATGTGAAGGTATATGTGTTGTCTATTTATATGATGGATGATCGATTATTATCATACATAATTGTTTTCAATGTAGAATGA | 414 | 0.3116 | MDNISVDKAMMYLTEIKHAFKDDKDKYKEFLRAMTDINERRINMACLMSGVKKLFKGHKELLVKFNTFLPDDVEYSEVTSQPKKSDDEYDEVSSQPKTSNVNLEYAIKYLRDVKVYVLSIYMMDDRLLSYIIVFNVE | 137 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g02407 | 137 | FunFam | Paired amphipathic helix protein Sin3 | 8 | 70 | - | - | |
Trre10g02407 | 137 | PANTHER | SIN3B-RELATED | 6 | 114 | IPR039774 | GO:0003714 | |
Trre10g02407 | 137 | Gene3D | Paired amphipathic helix | 8 | 70 | IPR036600 | GO:0006355 | |
Trre10g02407 | 137 | ProSiteProfiles | PAH domain profile. | 2 | 72 | IPR003822 | GO:0006355 | |
Trre10g02407 | 137 | SUPERFAMILY | PAH2 domain | 3 | 72 | IPR036600 | GO:0006355 | |
Trre10g02407 | 137 | Pfam | Paired amphipathic helix repeat | 25 | 69 | IPR003822 | GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g02407 | Trre-Chr10 | 29487823 | 29488331 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre10g02407 | 1 | 109 | WRKY Transcription Factor Family | AT4G12020 | 29.167 | 4.79e-10 | 54.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Trre10g02407 | PAH | 3.9e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g02407 | K11644 | - | tpra:123904389 | 126.331 |