Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02402 ATGGATAACATATCTGTTGATAAAGTCATGATGTATCTCACTGAAATAAAGCATGCGTTTAAAGACGATAAGGACAAGTACAAGGAGTTTTTAAGGGCAATGATAGATATCAATGAAAGAAGAATTAATATGGCATGTTTGATGTCAAGAGTGAAGAAATTATTTAAAGGGCACAAAGAATTATTAGTGAAATTTAATACATTTTTGCCGGATGATGTCGAATATAGTGAAGTTACTTCTCAACCAAAAAAGTCAGATGATGAATATGATGAAGTTTCTTCTCAACCAAAGACGTCAAATGTGAATTTAGAATATGCTATCAAATATTTGCGCGATGTGAAGGTATATGTGTTGTCTATTTATATGATGGATGATCGATTATTATCATACATAATTGTTTTCAATGTAGAATGA 414 0.3043 MDNISVDKVMMYLTEIKHAFKDDKDKYKEFLRAMIDINERRINMACLMSRVKKLFKGHKELLVKFNTFLPDDVEYSEVTSQPKKSDDEYDEVSSQPKTSNVNLEYAIKYLRDVKVYVLSIYMMDDRLLSYIIVFNVE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02402 137 FunFam Paired amphipathic helix protein Sin3 8 70 - -
Trre10g02402 137 SUPERFAMILY PAH2 domain 3 72 IPR036600 GO:0006355
Trre10g02402 137 Pfam Paired amphipathic helix repeat 25 69 IPR003822 GO:0006355
Trre10g02402 137 ProSiteProfiles PAH domain profile. 2 72 IPR003822 GO:0006355
Trre10g02402 137 Gene3D Paired amphipathic helix 9 70 IPR036600 GO:0006355
Trre10g02402 137 PANTHER SIN3B-RELATED 7 114 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02402 Trre-Chr10 29416703 29417211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02402 1 109 WRKY Transcription Factor Family AT4G12020 29.167 3.83e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02402 PAH 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02402 K11644 - tpra:123904389 126.716