Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02401 ATGAGTGGATCTTCAAGTGCAAACATAAAATCTACCGATGATATATTGGCGTATCTGAATGAAATTAATGATGCATTTAAAGACGAGGTGCAAAAGTTTGATGATTTTATAGGGGTTATGAGTGATTTCAAGGAAAAAAGAATTGATGTTGAAGGTGTTGTATCAAGAGTGAAGGAATTGTTTAAGGAGCATGAAGAATTGTTATTGAAATTTAATGACTATGTACCGGAAAAATATAAGGTGGCAAATAGAATGAGTGGATCTTCAAGTGCAAACATAAAATCTACCGATGATATATTGGCATATCTGAATGAAATTAATGATGCATTTAAAGACGAGGTGCAAAAGTTTGATGATTTTAGAGGGGTTATGAGAGATTTCAAGGAAAAAAGAATTGATGTTGAAGGTGTTGTATCAAGAGTGAAGGAGTTGTTTAAAGAGCATGAAGAATTGTTATTGAAATTTAATGACTATTTACCGGAAGAATATAAAGTCTCACTTGAATGA 507 0.3195 MSGSSSANIKSTDDILAYLNEINDAFKDEVQKFDDFIGVMSDFKEKRIDVEGVVSRVKELFKEHEELLLKFNDYVPEKYKVANRMSGSSSANIKSTDDILAYLNEINDAFKDEVQKFDDFRGVMRDFKEKRIDVEGVVSRVKELFKEHEELLLKFNDYLPEEYKVSLE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02401 168 FunFam Paired amphipathic helix protein Sin3 98 160 - -
Trre10g02401 168 ProSiteProfiles PAH domain profile. 89 162 IPR003822 GO:0006355
Trre10g02401 168 FunFam Paired amphipathic helix protein Sin3 14 76 - -
Trre10g02401 168 PANTHER SIN3B-RELATED 95 167 IPR039774 GO:0003714
Trre10g02401 168 ProSiteProfiles PAH domain profile. 5 78 IPR003822 GO:0006355
Trre10g02401 168 Pfam Paired amphipathic helix repeat 32 74 IPR003822 GO:0006355
Trre10g02401 168 Pfam Paired amphipathic helix repeat 116 159 IPR003822 GO:0006355
Trre10g02401 168 Gene3D Paired amphipathic helix 98 160 IPR036600 GO:0006355
Trre10g02401 168 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Trre10g02401 168 SUPERFAMILY PAH2 domain 11 76 IPR036600 GO:0006355
Trre10g02401 168 SUPERFAMILY PAH2 domain 95 161 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02401 Trre-Chr10 29383330 29384222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02401 11 81 WRKY Transcription Factor Family AT4G12020 42.254 9.73e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02401 PAH 9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02401 - K11644 psat:127121411 87.0409