Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02400 ATGAGTGGATCTTCAAGTGCAAACATAAAATCTACCGATGATATATTGGCGTATCTGAATGAAATTAATGATGCATTTAAAGACGAGGTGCAAAAGTTTGATGATTTTATAGGGGTTATGAGTGATTTCAAGGAAAAAAGAATTGATGTTGAAGGTGTTGTATCAAGAGTGAAGGAATTGTTTAAGGAGCATGAAGAATTGTTATTGAAATTTAATGACTATGTACCGGAAAAATATAAGAGAATGAGTGGATCTTCAAGTGCAAACATAAAATCTACCGATGATATATTGGCATATCTGAATGAAATTAATGATGCATTTAAAGACGAGGTGCAAAAGTTTGATGATTTTAGAGGGGTTATGAGAGATTTCAAGGAAAAAAGAATTGATGTTGAAGGTGTTGTATCAAGAGTGAAGGAGTTGTTTAAAGAGCATGAAGAATTGTTATTGAAATTTAATGACTATTTACCGGAAGAATATAAAGTCTCACTTGAATGA 498 0.3173 MSGSSSANIKSTDDILAYLNEINDAFKDEVQKFDDFIGVMSDFKEKRIDVEGVVSRVKELFKEHEELLLKFNDYVPEKYKRMSGSSSANIKSTDDILAYLNEINDAFKDEVQKFDDFRGVMRDFKEKRIDVEGVVSRVKELFKEHEELLLKFNDYLPEEYKVSLE 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02400 165 SUPERFAMILY PAH2 domain 11 76 IPR036600 GO:0006355
Trre10g02400 165 ProSiteProfiles PAH domain profile. 86 159 IPR003822 GO:0006355
Trre10g02400 165 PANTHER SIN3B-RELATED 92 164 IPR039774 GO:0003714
Trre10g02400 165 FunFam Paired amphipathic helix protein Sin3 14 76 - -
Trre10g02400 165 Gene3D Paired amphipathic helix 95 157 IPR036600 GO:0006355
Trre10g02400 165 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Trre10g02400 165 SUPERFAMILY PAH2 domain 92 158 IPR036600 GO:0006355
Trre10g02400 165 ProSiteProfiles PAH domain profile. 5 78 IPR003822 GO:0006355
Trre10g02400 165 FunFam Paired amphipathic helix protein Sin3 95 157 - -
Trre10g02400 165 Pfam Paired amphipathic helix repeat 113 156 IPR003822 GO:0006355
Trre10g02400 165 Pfam Paired amphipathic helix repeat 32 74 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02400 Trre-Chr10 29383330 29384222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02400 11 80 WRKY Transcription Factor Family AT4G12020 42.857 2.26e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02400 PAH 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02400 - K11644 psat:127121411 85.1149