Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02399 ATGAGTGGATCTTCAAGTGCAAACATAAAATCTACCGATGATATATTGGCGTATCTGAATGAAATTAATGATGCATTTAAAGACGAGGTGCAAAAGTTTGATGATTTTAGAGGGGTTATGAGAGATTTCAAGGAAAAAAGAATTGATGTTGAAGGTGTTGTATCAAGAGTGAAGGAGTTGTTTAAAGAGCATGAAGAATTGTTATTGAAATTTAATGACTATTTACCGGAAGAATATAAAGTCTCACTTGAATGA 255 0.3216 MSGSSSANIKSTDDILAYLNEINDAFKDEVQKFDDFRGVMRDFKEKRIDVEGVVSRVKELFKEHEELLLKFNDYLPEEYKVSLE 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02399 84 ProSiteProfiles PAH domain profile. 5 78 IPR003822 GO:0006355
Trre10g02399 84 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Trre10g02399 84 SUPERFAMILY PAH2 domain 11 77 IPR036600 GO:0006355
Trre10g02399 84 Pfam Paired amphipathic helix repeat 32 75 IPR003822 GO:0006355
Trre10g02399 84 PANTHER SIN3B-RELATED 11 83 IPR039774 GO:0003714
Trre10g02399 84 FunFam Paired amphipathic helix protein Sin3 14 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02399 Trre-Chr10 29346181 29346523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02399 11 83 WRKY Transcription Factor Family AT4G12020 43.836 1.09e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02399 PAH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02399 - K11644 ath:AT1G59890 77.4109