Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02397 ATGTCAAGGCTAGGAGAACCGTCCCAGATGAAGAACATACGTTCTATGGAATTTAAAGATGGTTTAGAATTTTTGAAAGACGCGAAGAGTAGATTTATTCAAGAAAATAAGAAGGATAAGTATGATGACTTTGTGAGACTCTTGATTGCTTATAAGGAAAAAAGATTGAAGGAAATATTTCAAGGTCATAGAGATTTGCATCAGAGATTAAACGAATTCATACCAATAGGATATGAAATCGAACTTCCATCAAAGGGTCAGCAATCTTGCCAAAAGAAACATGTTACAATGGAAGATGCTGTAAATTTTTTGAAAAAGATAAAGACTCAATTTCAAGGTGTTGAGGATGTTCACATTTACTATTCATTTCTTAACATATTAATTATGCACTATAAGAAACACAAGTCTTTCAATGAGGTTTGCCAAGAGGTTGCTTTTATTTTCAAAGGTCATCCCGACATTCTTGATGAATTTACTTATTTTCTTCCGGAAGCTATTTCTTCTCATTATGCACAAAATTTTGTGCTTCAAGATATATAG 540 0.3241 MSRLGEPSQMKNIRSMEFKDGLEFLKDAKSRFIQENKKDKYDDFVRLLIAYKEKRLKEIFQGHRDLHQRLNEFIPIGYEIELPSKGQQSCQKKHVTMEDAVNFLKKIKTQFQGVEDVHIYYSFLNILIMHYKKHKSFNEVCQEVAFIFKGHPDILDEFTYFLPEAISSHYAQNFVLQDI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02397 179 Pfam Paired amphipathic helix repeat 118 162 IPR003822 GO:0006355
Trre10g02397 179 SUPERFAMILY PAH2 domain 92 163 IPR036600 GO:0006355
Trre10g02397 179 ProSiteProfiles PAH domain profile. 14 77 IPR003822 GO:0006355
Trre10g02397 179 PANTHER SIN3B-RELATED 19 167 IPR039774 GO:0003714
Trre10g02397 179 Gene3D Paired amphipathic helix 89 165 IPR036600 GO:0006355
Trre10g02397 179 ProSiteProfiles PAH domain profile. 93 165 IPR003822 GO:0006355
Trre10g02397 179 FunFam Paired amphipathic helix SIN3-like protein 92 165 - -
Trre10g02397 179 SUPERFAMILY PAH2 domain 15 75 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02397 Trre-Chr10 29289256 29290258 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02397 PAH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02397 K11644 - tpra:123904388 218.009