Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02396 ATGAAGAACCGATTTTCTATGGAACATTGTACTAAAGATGCTTTGGAATTTCTCAAAGAAGTAAGGAGTAGATTTACCGAAGATAATAGGAGGGATAAGTTTGATGACTTTGTGAGATTATTCATGGCTTATAAGAAAGAAAGGATTGATGTTGCGGATTTAATAAAAAGATTGAAGGAAATATTTGAAGATCATATAGATTTGCTATGGAAATTAAACAAATTCTTGCCAATTGAATGTGAAATCAAACTTCCATTGGATGGTGAACAATCTAGCCCAAAGAAGCATGCTAAAAAGGAAGATGCTATAAATTTTTTGAAAAAGATAAAGGCTAGGTTTCATGGTGTTGATGATGTTCACATTTACTATTCATTTCTTAACATATTAATTATGTATTATAAGAAACAAAAGTCTTTCATTAACGTCTTGCAAGAGCTCTTCCGTCGTCGATTTCCATGGCTGTTTTTGTTTAGCCTTCGGCCGCGTCTCCAAGCTCTGGCGAGGTTTGAAACTTTGGCATTGCAATTTGGCTTTGTTTTACACATGCAGGTTCATATTAACATTGATGACATTCTTATATTTTCTCATGATTTTGCTCCAATTCGTGTTGATCAATTTGAGATTCTTGATTTGGATCGATTGAGTGAGATTTTCAGAACCATGAGCAACTTGAGGCTAGGAGAACCGTCCCAGATGAAGAACATACGTTCTATGGAATTTAAAGATGGTTTAGAATTTTTGAAAGACGCGAAGAGTAGATTTATTCAAGAAAATAAGAAGGATAAGTATGATGACTTTGTGAGACTCTTGATTGCTTATAAGGAAAAAAGATTGAAGGAAATATTTCAAGGTCATAGAGATTTGCATCAGAGATTAAACGAATTCATACCAATAGGATATGAAATCGAACTTCCATCAAAGGGTCAGCAATCTTGCCAAAAGAAACATGTTACAATGGAAGATGCTGTAAATTTTTTGAAAAAGATAAAGACTCAATTTCAAGGTGTTGAGGATGTTCACATTTACTATTCATTTCTTAACATATTAATTATGCACTATAAGAAACACAAGTCTTTCAATGAGGTTTGCCAAGAGGTTGCTTTTATTTTCAAAGGTCATCCCGACATTCTTGATGAATTTACTTATTTTCTTCCGGAAGCTATTTCTTCTCATTATGCACAAAATTTTGTGCTTCAAGATATATAG 1206 0.3317 MKNRFSMEHCTKDALEFLKEVRSRFTEDNRRDKFDDFVRLFMAYKKERIDVADLIKRLKEIFEDHIDLLWKLNKFLPIECEIKLPLDGEQSSPKKHAKKEDAINFLKKIKARFHGVDDVHIYYSFLNILIMYYKKQKSFINVLQELFRRRFPWLFLFSLRPRLQALARFETLALQFGFVLHMQVHINIDDILIFSHDFAPIRVDQFEILDLDRLSEIFRTMSNLRLGEPSQMKNIRSMEFKDGLEFLKDAKSRFIQENKKDKYDDFVRLLIAYKEKRLKEIFQGHRDLHQRLNEFIPIGYEIELPSKGQQSCQKKHVTMEDAVNFLKKIKTQFQGVEDVHIYYSFLNILIMHYKKHKSFNEVCQEVAFIFKGHPDILDEFTYFLPEAISSHYAQNFVLQDI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02396 401 Gene3D Paired amphipathic helix 91 150 IPR036600 GO:0006355
Trre10g02396 401 Gene3D Paired amphipathic helix 311 387 IPR036600 GO:0006355
Trre10g02396 401 SUPERFAMILY PAH2 domain 314 385 IPR036600 GO:0006355
Trre10g02396 401 ProSiteProfiles PAH domain profile. 3 79 IPR003822 GO:0006355
Trre10g02396 401 ProSiteProfiles PAH domain profile. 236 299 IPR003822 GO:0006355
Trre10g02396 401 SUPERFAMILY PAH2 domain 237 297 IPR036600 GO:0006355
Trre10g02396 401 FunFam Paired amphipathic helix SIN3-like protein 314 387 - -
Trre10g02396 401 SUPERFAMILY PAH2 domain 94 145 IPR036600 GO:0006355
Trre10g02396 401 Pfam Paired amphipathic helix repeat 340 384 IPR003822 GO:0006355
Trre10g02396 401 Pfam Paired amphipathic helix repeat 32 76 IPR003822 GO:0006355
Trre10g02396 401 PANTHER SIN3B-RELATED 9 145 IPR039774 GO:0003714
Trre10g02396 401 ProSiteProfiles PAH domain profile. 315 387 IPR003822 GO:0006355
Trre10g02396 401 Gene3D Paired amphipathic helix 13 77 IPR036600 GO:0006355
Trre10g02396 401 SUPERFAMILY PAH2 domain 6 77 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02396 Trre-Chr10 29289256 29297248 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02396 11 87 WRKY Transcription Factor Family AT4G12020 39.744 4.77e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02396 PAH 9.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02396 K11644 - tpra:123904388 218.009