Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02395 ATGGAGCTTGAATGGAAAGTTGCTATTCGTATATATGGTGTTGATTTGTACGATGAAGTAGAGAATAGATTCAAAGATAATAAGGAAAAGTTTAAGGATTTTATGAACGCCTTGACGGAATATTTCATACAAGGAGACATTGCGGATTTGGCAACAAAAATGAAGAAAATATTAGAAGGCCATAAAGATTTGGTATTGAAATTTAACATAATCCTGCCAGATCCATATAAAATAAAGGATGGAAATACTAGCCTAAAGAAGCGTCCTAATTTGGAAGATGCTAAGAGTTTTTTGAGAAAGATAAGGGCTCAATTTCAAGGGGTCGATGATCACATTTACAAATCATTGATTGCCATATTGCATAGGTATTATAGGAAAGTTGAGTCTTTCGATGCGGTTTACCAAGAGGTTACTACACTTCTCAAAGACCACCCTGATCTTCTTAATGAATTTATTCATTTTCTTCCGAATGGTATTGCTTCAAAAAAGGTTATTGCTTCTCGTTATGTTGCTGCTTGCAATCGTGTGCGTCGAGAATCAACAATGTGGCAAATTCAGGTATGCGGGGTTGATAAGGATAAGGATAAGGAGACAACTAAGTGA 603 0.3566 MELEWKVAIRIYGVDLYDEVENRFKDNKEKFKDFMNALTEYFIQGDIADLATKMKKILEGHKDLVLKFNIILPDPYKIKDGNTSLKKRPNLEDAKSFLRKIRAQFQGVDDHIYKSLIAILHRYYRKVESFDAVYQEVTTLLKDHPDLLNEFIHFLPNGIASKKVIASRYVAACNRVRRESTMWQIQVCGVDKDKDKETTK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02395 200 Gene3D Paired amphipathic helix 14 73 IPR036600 GO:0006355
Trre10g02395 200 SUPERFAMILY PAH2 domain 18 74 IPR036600 GO:0006355
Trre10g02395 200 SUPERFAMILY PAH2 domain 83 157 IPR036600 GO:0006355
Trre10g02395 200 FunFam Paired amphipathic helix SIN3-like protein 86 158 - -
Trre10g02395 200 ProSiteProfiles PAH domain profile. 87 158 IPR003822 GO:0006355
Trre10g02395 200 Pfam Paired amphipathic helix repeat 111 155 IPR003822 GO:0006355
Trre10g02395 200 Gene3D Paired amphipathic helix 93 156 IPR036600 GO:0006355
Trre10g02395 200 ProSiteProfiles PAH domain profile. 5 75 IPR003822 GO:0006355
Trre10g02395 200 PANTHER SIN3B-RELATED 18 160 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02395 Trre-Chr10 29282070 29284583 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02395 PAH 8.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02395 K11644 - tpra:123904383 167.933