Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02394 ATGAAGCGGTTACGAGACGACGGTTTCACGAGTTCATCTTCTCAACTCAAACGACCTATGATGTCATCTTCTAGAGGAGAACGAGAACCGTCTGGGCAACACCAGATGATGAATGGAGCTGGTCAAAAACTGACTACTAATGATGCCTTAGCGTATCTCAAGGCAGTAAAGGATATTTTTCAAGATAAGAGGGATAAATATGATGAATTTTTGGAGGTCATGAAAGATTTTAAAGCACAGAGAATCGATACTGTGGGTGTCATAGCTAGAGTGAAGGATCTTTTTAGAGGTCACACAGATTTGATATTAGGATTCAACACCTTTTTGCCAAAGGGATATGAAATCACCCTTCCGATAGAGGATGAGCAACCTCAACCAAAAAAGCAAGTTGAATTTGATGAAGCTATGAGTTATGTGAACAAGATAAAGACTCGGTTTCGTGGTGATGACCGTGTTTACAAGTCATTTCTAGAAATATTGAATATGTACAGAAAGGAAAATAAGTCTATCGATGCGGTCTACCAGGAGGTTGCTGCACTCTTCGAAGACCACCCAGATCTTCTGGATGGGTTTATTAATTTTCTTCCGGATGCTACCACAGCTGCCTCTACTCATGCTGCTGCTCGGAATTCTGTGTTTCGTGATAGGCGCTCTGCAATGCCAACACTGCGGCAAGTGCATGTTGAAAAGAGAGAAAGGACCATTGTTTCACGTGGTGACCGTGACCCCAGTGTAGACCGTCCTGACCCCGAGCATGATGGAGGTTTGTTCAGGGCAGAAAAGGAGCATAAGAGACGTGTGGAGAAGGAAAAGAGCCGCAGAGAAGATAGAGATAGGAGAGAACGAGAACGAAATGAAAGAGATTATGAGCATGACAGGGGTCGAGATATGGAGCGGTTATCCCACAAACGAAAATCTGATCATAAGGTTGAAGACTCAGGAGCTGAACCATTACTTCATGCAGATCAAAATTTTGGTATGTATAGTCAAGAGTTAGCTTTCTGTGCTGAAGTCAAAGAGAGATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAGGGAAATTATTACTCGACAAGAATTGCAGTCACTGGTGGGAGATTTACTGGGAAAGTATCCAGATCTTATGGAAGGGTTTAATGAGTTTTTGCTTCAAGCTGAGAAGAATGATGGTGGATTCCTTGCTGGTGTTATGACTAAAAAGTCCTTATGGATTGAAGGAAATGGACTGAAACCAATGAAGGCTGAACGGAGGGATAGAGATAGGGGTCATGATAAAGATCGTTACAGGGATGATGGGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGATAAATCTACTACGATTTTCAACAAGGATGTTTCAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATCTCTCAAAACCAATAAATGAGCTGGACCTTTCTAACTGTGAGCAATGCACTCCCAGTTACCGTCTCCTCCCAAAAAATTATCCAATACCTATTGCTAGCCAGAGAACAGAACTTGGTGCGGAAGTGTTGAACGATCACTGGGTGTCGGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTCGATATGTTATTAGAATCTGTAAACGTGACAACTAAACGAGTACAGGAGCTTTTAGAAAAGATCAACAATAATCTAACTAAAAGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATTTCAGGTGTATTGAACGAATATATGGTGACCATGGTCTTGATGCCTTGGAAGTGCTAAAGAAGAATGCATCCCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAAGAAGACTGGGAAAGATGTCGTGCTGATTTCAGTAAAGTATGGGCTGAAATATATTCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGACACAAAAAGTTTGAGCACCAAAGCCTTACTGGCCGAAATCAAAGAAATCAATGAGAAGAAACTCAAAGAAGACGATGTTCTTCTTGCAAATGCTGCTGGAAATAGACGGCCTATTTTTCCAAACCTGGAGTTTGAGTATCTCGATCCAGACATTCATGAAGATTTGTATCAGCTTATAAAATATTCGTGTGGAGAAGTTTGCACAACTGAACAGGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAATCCATGTTTTGTGTTCCTTGTCGGCCCCAGGGTACTGAAGATACTGAAGATGTTGCTGTGGCTAAGAATAATTCTGCGAGAAATGTTGCTGAAAGTGATGGTAGTCCTGGGGTTGGCGCTACCATAGTAAACCCAAAGCATATAAATACTTCTAGAAATGGTGATGAGTGTGTACCATTAGATCAGTCACCTTCCAGCAAAGCATGGGAATCAAATGGTGATACTGGGATTAGAGAAGATAAATACCTTGATTCAGATTGTACTGTGCGTAAAAGTGAAACTTGCGGCAGTAATCCACAACACGGTAAACCGGATATTATTGCACCCATGCCTACTGAGCTATCAGGAGTCAATATGCAAGATCTCTCTGGTGAGCGCTTAGTGAATACTAATGTTGCACCAGCATCTGGAGTGGAGCTGAGTAGTGGAAGTATAAAGATAGATAATGCATCAGGACATGCTGCTACTCCATCTAGAAACGGTAATGTATCTGTCGTGGGAGGACTTGAATTACCTTCATCAGAGGGTGGTGATTCTGCAAGACCAGGTACATCCACAAATGGGGCCATCACGGGAGGCACTGAAGTTTGCAGAGACCTAGAGGATTCAAATCGACAGTTCAAAAGCGAAAGAGAAGAGGGTGAGTTATCTCCAACTGGAGAATTTGAAGGGGAAGAAGCCAGGAGAGAAAATTATGCGGATGCTGATGATGAAGGGGAAGAAAGTCCTCAGAGGTCATCCGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGAAGCGAATCTGCTGATGGAGAGGAGGGTTCTCGAGAAGAGCATGAGGATGGAGAACATGATAATAAGGCTGAAAGTGAAGGTGAGGCTGAAGGAATGGCTGATGCGCATGACATTGAAGGAGATGGAATCCCATTGCCATTTTCTGAACGTTTTCTTCTAAACGTGAAGCCATTGGCAAAGCATGTTCCCCCAGTTTTCCAAGTTAAAGACAGGAATTCTCATGTTTTTTATGGAAGTGACTCCTTTTATGTGCTGATTAGACTTCATCAGACATTGTATGAGAGGATACATTCAGCAAAGGTAAACTCATCATCCGCTGAAAGGAAATGGAGGGCTTCAAATGATACAAGCTCTACTGATCAATATGACAGGTTCATGAATTCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTGGACAAACTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCGAGTGATGAGATGGATAATAAGCTTCTTCAACTATATGCATATGAGAAATCAAGAAAACATGAAAAGTTTGTCGATATAGTTTATCACGAAAATGCTCGTATTCTTCTTCATGATGAGAACATATATCGCATTGAATATTCACCAAAACCAAAGGCACTCTTTATTCAACTCATGGACTGTGGAAATGATAAGCATGAAGTGACTGCTGTGTCAATGGACCCGGAATTTTCTGCCTATCTGTCCAATGATTTCCTCACTATTGTCCCCGACGAGAACAACTCAGGGATTTTCTTGAAAAGGAACAAACGGGGATATGCCTGTAGTGATGAATTTTCAAATGAGGTTATGGAAGGACTACAAGTTATTAATGGTCTCGAGTGTAAGATAGCTTGCGATTCTTCTAAGGTATCGTACGTTTTAGATACAGAAGACTTCTTGTTTCGGACTAGAAGCAGAAGAAAAGCTTTGCATCTGAAGAGTTTGTGCCATGAACAAGAGAAGTCTTCAAACATTCGTTCCAGAAGAGTAGCTAGGTTCCGCAAATTGTTGTCCTTGACATGA 4143 0.4106 MKRLRDDGFTSSSSQLKRPMMSSSRGEREPSGQHQMMNGAGQKLTTNDALAYLKAVKDIFQDKRDKYDEFLEVMKDFKAQRIDTVGVIARVKDLFRGHTDLILGFNTFLPKGYEITLPIEDEQPQPKKQVEFDEAMSYVNKIKTRFRGDDRVYKSFLEILNMYRKENKSIDAVYQEVAALFEDHPDLLDGFINFLPDATTAASTHAAARNSVFRDRRSAMPTLRQVHVEKRERTIVSRGDRDPSVDRPDPEHDGGLFRAEKEHKRRVEKEKSRREDRDRRERERNERDYEHDRGRDMERLSHKRKSDHKVEDSGAEPLLHADQNFGMYSQELAFCAEVKERLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQAEKNDGGFLAGVMTKKSLWIEGNGLKPMKAERRDRDRGHDKDRYRDDGMKERDREFRERDKSTTIFNKDVSGSKMSLYPSKDKYLSKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVQELLEKINNNLTKRDSPIRIEEHLTALNFRCIERIYGDHGLDALEVLKKNASLALPVILTRLKQKQEDWERCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEINEKKLKEDDVLLANAAGNRRPIFPNLEFEYLDPDIHEDLYQLIKYSCGEVCTTEQVDKVMKVWTTFLESMFCVPCRPQGTEDTEDVAVAKNNSARNVAESDGSPGVGATIVNPKHINTSRNGDECVPLDQSPSSKAWESNGDTGIREDKYLDSDCTVRKSETCGSNPQHGKPDIIAPMPTELSGVNMQDLSGERLVNTNVAPASGVELSSGSIKIDNASGHAATPSRNGNVSVVGGLELPSSEGGDSARPGTSTNGAITGGTEVCRDLEDSNRQFKSEREEGELSPTGEFEGEEARRENYADADDEGEESPQRSSEDSENASENGDVSGSESADGEEGSREEHEDGEHDNKAESEGEAEGMADAHDIEGDGIPLPFSERFLLNVKPLAKHVPPVFQVKDRNSHVFYGSDSFYVLIRLHQTLYERIHSAKVNSSSAERKWRASNDTSSTDQYDRFMNSLYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKHEKFVDIVYHENARILLHDENIYRIEYSPKPKALFIQLMDCGNDKHEVTAVSMDPEFSAYLSNDFLTIVPDENNSGIFLKRNKRGYACSDEFSNEVMEGLQVINGLECKIACDSSKVSYVLDTEDFLFRTRSRRKALHLKSLCHEQEKSSNIRSRRVARFRKLLSLT 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02394 1380 Gene3D Paired amphipathic helix 325 394 IPR036600 GO:0006355
Trre10g02394 1380 MobiDBLite consensus disorder prediction 831 846 - -
Trre10g02394 1380 FunFam Paired amphipathic helix protein Sin3 48 110 - -
Trre10g02394 1380 Pfam Sin3 family co-repressor 490 581 IPR013194 -
Trre10g02394 1380 Pfam Paired amphipathic helix repeat 152 195 IPR003822 GO:0006355
Trre10g02394 1380 Pfam Paired amphipathic helix repeat 65 109 IPR003822 GO:0006355
Trre10g02394 1380 Pfam Paired amphipathic helix repeat 346 390 IPR003822 GO:0006355
Trre10g02394 1380 MobiDBLite consensus disorder prediction 1 39 - -
Trre10g02394 1380 MobiDBLite consensus disorder prediction 786 869 - -
Trre10g02394 1380 Gene3D Paired amphipathic helix 48 110 IPR036600 GO:0006355
Trre10g02394 1380 MobiDBLite consensus disorder prediction 421 452 - -
Trre10g02394 1380 ProSiteProfiles PAH domain profile. 128 198 IPR003822 GO:0006355
Trre10g02394 1380 MobiDBLite consensus disorder prediction 802 830 - -
Trre10g02394 1380 ProSiteProfiles PAH domain profile. 321 393 IPR003822 GO:0006355
Trre10g02394 1380 MobiDBLite consensus disorder prediction 216 314 - -
Trre10g02394 1380 Pfam C-terminal domain of Sin3a protein 1095 1340 IPR031693 -
Trre10g02394 1380 ProSiteProfiles PAH domain profile. 42 112 IPR003822 GO:0006355
Trre10g02394 1380 MobiDBLite consensus disorder prediction 956 1010 - -
Trre10g02394 1380 SUPERFAMILY PAH2 domain 41 111 IPR036600 GO:0006355
Trre10g02394 1380 MobiDBLite consensus disorder prediction 220 314 - -
Trre10g02394 1380 SUPERFAMILY PAH2 domain 328 392 IPR036600 GO:0006355
Trre10g02394 1380 Gene3D Paired amphipathic helix 127 199 IPR036600 GO:0006355
Trre10g02394 1380 MobiDBLite consensus disorder prediction 908 1049 - -
Trre10g02394 1380 FunFam Paired amphipathic helix SIN3-like protein 127 198 - -
Trre10g02394 1380 SUPERFAMILY PAH2 domain 125 197 IPR036600 GO:0006355
Trre10g02394 1380 PANTHER SIN3B-RELATED 42 1239 IPR039774 GO:0003714
Trre10g02394 1380 MobiDBLite consensus disorder prediction 936 950 - -
Trre10g02394 1380 FunFam Paired amphipathic helix protein SIN3 323 395 - -
Trre10g02394 1380 SMART hdac_interact2seq4b 488 588 IPR013194 -
Trre10g02394 1380 MobiDBLite consensus disorder prediction 1023 1049 - -
Trre10g02394 1380 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02394 Trre-Chr10 29263102 29275889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02394 37 124 WRKY Transcription Factor Family AT4G12020 60.000 4.12e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02394 Sin3a_C 4e-57 No_clan