Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02388 ATGTTTTCAGGTACATTTCCTGTTACTGTAAAGGACTTCAATGATAGATATCTTCGTAAGCCATATATCATTAACCTTATGGATGAGCTAACTCTCAAGGGTATTACACAATTTTATGCATTTGTGGATGAGAGGCAGAAGGTCCACTGCCTAAATACTCTTTTCTCTAAGAAAATCACAGAACTAGGATATTCGTGTTTCTACATTCATGCTAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCATGACTTCCGCAATGGTGCCTGCAGGAATCTTGTTTGTACTGATCTTGTCACTAGGGGAATATATATTCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACATATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGACACCTTGGTTTGGCAGTGAACTTGATAACCTATGAGGACCGCTTCAATTTGTATAGGATTGAGCAAGAACTCAGCACTGAAATAAAACAAATTCCTCCTTTCATTGATCAGGCAATATATTGTCAGTGA 531 0.3804 MFSGTFPVTVKDFNDRYLRKPYIINLMDELTLKGITQFYAFVDERQKVHCLNTLFSKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLVTRGIYIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELSTEIKQIPPFIDQAIYCQ 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02388 176 SMART helicmild6 53 134 IPR001650 -
Trre10g02388 176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 171 IPR027417 -
Trre10g02388 176 CDD SF2_C_DEAD 35 143 - -
Trre10g02388 176 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 175 - -
Trre10g02388 176 Pfam Helicase conserved C-terminal domain 34 134 IPR001650 -
Trre10g02388 176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 22 173 IPR001650 -
Trre10g02388 176 Gene3D - 28 175 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02388 Trre-Chr10 29214858 29215982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02388 1 166 Eukaryotic Initiation Factors Gene Family AT1G72730 35.450 3.12e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02388 K12614 - han:110937653 336.65